lepB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lepB''  
''lepB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2566, b2568, JW2552, lep''<ref name='LIB:Riley_2006'/>
''ECK2566, b2568, JW2552, lep''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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leader peptidase (signal peptidase I)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
leader peptidase (signal peptidase I)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Signal peptidase I; SPI; responsible for type I signal cleavages of periplasmic, OM, some IM, and extracellular proteins<ref name='LIB:EcoGene'/>
Signal peptidase I; SPI; responsible for type I signal cleavages of periplasmic, OM, some IM, and extracellular proteins<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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leader peptidase (signal peptidase I)<ref name='LIB:Riley_2006'/>, B2568<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Lep<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LepB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LP1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
leader peptidase (signal peptidase I)<ref name='LIB:Riley_2006'/>, B2568<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Lep<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LepB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LP1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0016485 protein processing ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006508 proteolysis ([http://www.geneontology.org/GO.evidence.shtml IMP,IDA])
'''Molecular Function'''
* GO:0015643 toxin binding ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0008233 peptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP])
'''Cellular Component'''
* GO:0016021 integral to membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005886 plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:lepAB|lepAB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:lepAB|lepAB]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=lepB&loc=MG1655:2703331..2702357,W3110:2703965..2702991,REL606:2626802..2625828,DH10B:2795096..2794122 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2795096&end=2794122&gene=lepB&aa=manmfalilviatlvtgilwcvdkfffapkrrerqaaaqaaagdsldkatlkkvapkpgwletgasvfpvlaivlivrsfiyepfqipsgsmmptlligdfilvekfaygikdpiyqktlietghpkrgdivvfkypedpkldyikravglpgdkvtydpvskeltiqpgcssgqacenalpvtysnvepsdfvqtfsrrnggeatsgffevpknetkengirlserketlgdvthriltvpiaqdqvgmyyqqpgqqlatwivppgqyfmmgdnrdnsadsrywgfvpeanlvgrataiwmsfdkqegewptglrlsriggih Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lepB+AND+escherichia+coli Pubmed(lepB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lepB Textpresso(lepB)]


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Revision as of 23:47, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

lepB

Gene Synonym(s)

ECK2566, b2568, JW2552, lep[1]

Product Desc.

leader peptidase (signal peptidase I)[2][3]

Signal peptidase I; SPI; responsible for type I signal cleavages of periplasmic, OM, some IM, and extracellular proteins[4]

Product Synonyms(s)

leader peptidase (signal peptidase I)[1], B2568[2][1], Lep[2][1], LepB[2][1], LP1[2][1]

Function from GO

Biological Process

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lepAB[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(lepB)    Textpresso(lepB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


LepB has a blocked N-terminus. False positive lipoprotein prediction, shown to have no signal peptide. Targetted by SRP/FtsY to Sec/YidC for membrane insertion.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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