mutM:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''mutM''  
''mutM''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3625, b3635, JW3610, fpg''<ref name='LIB:Riley_2006'/>
''ECK3625, b3635, JW3610, fpg''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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formamidopyrimidine DNA glycosylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
formamidopyrimidine DNA glycosylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Formamidopyrimidine-DNA glycosylase/AP lyase; 5'-terminal deoxyribophosphodiesterase; DNA repair; GC to TA; binds Zn(II)<ref name='LIB:EcoGene'/>
Formamidopyrimidine-DNA glycosylase/AP lyase; 5'-terminal deoxyribophosphodiesterase; DNA repair; GC to TA; binds Zn(II)<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase<ref name='LIB:Riley_2006'/>, B3635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fpg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MutM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase<ref name='LIB:Riley_2006'/>, B3635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fpg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MutM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0019104 DNA N-glycosylase activity ([http://www.geneontology.org/GO.evidence.shtml IDA,EXP])
* GO:0004519 endonuclease activity ([http://www.geneontology.org/GO.evidence.shtml IDA,EXP])
* GO:0008270 zinc ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0046872 metal ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003684 damaged DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006974 response to DNA damage stimulus ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:mutM|mutM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rpmBG-mutM|rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yicR-rpmBG-mutM|yicR-rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:mutM|mutM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rpmBG-mutM|rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yicR-rpmBG-mutM|yicR-rpmBG-mutM]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=mutM&loc=MG1655:3809175..3808366,W3110:3829263..3830072,DH10B:3906752..3905943,REL606:3749507..3748698 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3749507&end=3748698&gene=mutM&aa=mpelpevetsrrgiephlvgatilhavvrngrlrwpvseeiyrlsdqpvlsvqrrakylllelpegwiiihlgmsgslrilpeelppekhdhvdlvmsngkvlrytdprrfgawlwtkeleghnvlthlgpeplsddfngeylhqkcakkktaikpwlmdnklvvgvgniyaseslfaagihpdrlasslslaecellarvikavllrsieqggttlkdflqsdgkpgyfaqelqvygrkgepcrvcgtpivatkhaqratfycrqcqk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=mutM+AND+escherichia+coli Pubmed(mutM)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=mutM Textpresso(mutM)]


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Revision as of 23:41, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

mutM

Gene Synonym(s)

ECK3625, b3635, JW3610, fpg[1]

Product Desc.

formamidopyrimidine DNA glycosylase[2][3]

Formamidopyrimidine-DNA glycosylase/AP lyase; 5'-terminal deoxyribophosphodiesterase; DNA repair; GC to TA; binds Zn(II)[4]

Product Synonyms(s)

formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase[1], B3635[2][1], Fpg[2][1], MutM[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mutM[2], rpmBG-mutM[2], yicR-rpmBG-mutM[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(mutM)    Textpresso(mutM)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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