yajL:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yajL''  
''yajL''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0418, b0424, JW5057, thiJ''<ref name='LIB:Riley_2006'/>(incorrect)
''ECK0418, b0424, JW5057, thiJ''<ref name='LIB:Riley_2006'/>(incorrect)
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Function unknown, PfpI/HchA protease/chaperone family; not involved in thiamine metabolism<ref name='LIB:EcoGene'/>
Function unknown, PfpI/HchA protease/chaperone family; not involved in thiamine metabolism<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, B0424<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YajL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
conserved protein<ref name='LIB:Riley_2006'/>, B0424<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YajL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0008902 hydroxymethylpyrimidine kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008972 phosphomethylpyrimidine kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016301 kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009228 thiamin biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IC])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yajL|yajL]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yajL|yajL]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yajL&loc=MG1655:442865..442275,W3110:442865..442275,DH10B:382196..381606,REL606:411473..412063 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=411473&end=412063&gene=yajL&aa=mnmsasalvclapgseeteavttidllvrggikvttasvasdgnlaitcsrgvklladaplvevadgeydvivlpggikgaecfrdstllvetvkqfhrsgrivaaicaapatvlvphdifpignmtgfptlkdkipaeqwldkrvvwdarvklltsqgpgtaidfglkiidllvgrekahevasqlvmaagiynyye Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yajL+AND+escherichia+coli Pubmed(yajL)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yajL Textpresso(yajL)]


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Revision as of 23:21, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

yajL

Gene Synonym(s)

ECK0418, b0424, JW5057, thiJ[1](incorrect)

Product Desc.

conserved protein[2][3]

Function unknown, PfpI/HchA protease/chaperone family; not involved in thiamine metabolism[4]

Product Synonyms(s)

conserved protein[1], B0424[2][1], YajL[2][1], ThiJ[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yajL[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(yajL)    Textpresso(yajL)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YajL has been mistakenly described as ThiJ, involved in thiamine metabolism. This phenotype is now attributed to the adjacent thiI gene. This error is acknowledged by T. Begley in a personal communication cited in the discussion section of Mueller et al., NAR 26:2606-10 (1998).C56 peptidase family; DJ-1/PARK7 superfamily.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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