pflD:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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PflD  
PflD  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted formate acetyltransferase 2 (pyruvate formate lyase II)<ref name='LIB:Riley_2006'/>, B3951<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YijL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PflD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, pyruvate formate-lyase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted formate acetyltransferase 2 (pyruvate formate lyase II)<ref name='LIB:Riley_2006'/>, B3951<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YijL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PflD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, pyruvate formate-lyase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left |Product description
!align=left {{table heading style}} |Product description
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formate acetyltransferase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
formate acetyltransferase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Putative pyruvate formate lyase II<ref name='LIB:EcoGene'/>
Putative pyruvate formate lyase II<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="C46ab103d9a2f2"  class=" tableEdit GO_table_product dataTable"   
{|  id="C46ab103d9a2f2"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-  
|-  
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="R46ab1041adc57"  class=" tableEdit Product_interactions_table"   
{|  id="R46ab1041adc57"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
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****************************************************************************************** -->{{Product_localization_help}}
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{|  id="W46a8980903706"  class=" tableEdit Product_localization_table"   
{|  id="W46a8980903706"  class=" tableEdit Product_localization_table"   
|-
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11910-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11910-MONOMER at EcoCyc]  
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TLREAQQRPQ DYAGLVVRVA GYSAFFVELS KEIQDDIIRR TAHQL</pre>  
TLREAQQRPQ DYAGLVVRVA GYSAFFVELS KEIQDDIIRR TAHQL</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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765
765
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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85.961 kDa
85.961 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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5.8 (calculated)
5.8 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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73,230 - 74,480 (calc based on 27 Y, 6 W, and 10 C residues)
73,230 - 74,480 (calc based on 27 Y, 6 W, and 10 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="W46ab104462cf0"  class=" tableEdit Product_motif_table"   
{|  id="W46ab104462cf0"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="X46ab104544160"  class=" tableEdit Product_resource_table"   
{|  id="X46ab104544160"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="D46ab1045a810f"  class=" tableEdit Gene_accessions_table"   
{|  id="D46ab1045a810f"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="J46a8980e11636"  class=" tableEdit Links_table"   
{|  id="J46a8980e11636"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:39, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PflD

Synonyms

predicted formate acetyltransferase 2 (pyruvate formate lyase II)[1], B3951[2][1], YijL[2][1], PflD[2][1], pyruvate formate-lyase 2[2][1]

Product description

formate acetyltransferase 2[2][3]

Putative pyruvate formate lyase II[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001150

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004184
SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0006006

glucose metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004184

P

Seeded from EcoCyc [5]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001150

P

Seeded from EcoCyc [5]

complete

GO:0008415

acyltransferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc [5]

complete

GO:0008861

formate C-acetyltransferase activity

GO_REF:0000002
GO_REF:0000003

IEA: Inferred from Electronic Annotation

InterPro:IPR004184
EC:2.3.1.54

F

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc [5]

complete

GO:0009061

anaerobic respiration

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

sdhA

PMID:16606699[7]

Experiment(s):EBI-1147132

Protein

ppc

PMID:16606699[7]

Experiment(s):EBI-1147132
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MTNRISRLKT ALFANTREIS LERALLYTAS HRQTEGEPVI LRRAKATAYI LEHVEISIRD
EELIAGNRTV KPRAGIMSPE MDPYWLLKEL DQFPTRPQDR FAISEEDKRI YREELFPYWE
KRSMKDFING QMTDEVKAAT NTQIFSINQT DKGQGHIIID YPRLLNHGLG ELVAQMQQHC
QQQPENHFYQ AALLLLEASQ KHILRYAELA ETMAANCTDA QRREELLTIA EISRHNAQHK
PQTFWQACQL FWYMNIILQY ESNASSLSLG RFDQYMLPFY QTSLTQGEDA AFLKELLESL
WVKCNDIVLL RSTSSARYFA GFPTGYTALL GGLTENGRSA VNVLSFLCLD AYQSVQLPQP
NLGVRTNALI DTPFLMKTAE TIRFGTGIPQ IFNDEVVVPA FLNRGVSLED ARDYSVVGCV
ELSIPGRTYG LHDIAMFNLL KVMEICLHEN EGNAALTYEG LLEQIRAKIS HYITLMVEGS
NICDIGHRDW APVPLLSSFI SDCLEKGRDI TDGGARYNFS GVQGIGIANL SDSLHALKGM
VFEQQRLSFD ELLSVLKANF ATPEGEKVRA RLINRFEKYG NDIDEVDNIS AELLRHYCKE
VEKYQNPRGG YFTPGSYTVS AHVPLGSVVG ATPDGRFAGE QLADGGLSPM LGQDAQGPTA
VLKSVSKLDN TLLSNGTLLN VKFTPATLEG EAGLRKLADF LRAFTQLKLQ HIQFNVVNAD
TLREAQQRPQ DYAGLVVRVA GYSAFFVELS KEIQDDIIRR TAHQL
Length

765

Mol. Wt

85.961 kDa

pI

5.8 (calculated)

Extinction coefficient

73,230 - 74,480 (calc based on 27 Y, 6 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pflD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11910-MONOMER

UniProt (EcoliWiki Page)

UniProt:P32674

PFAM (EcoliWiki Page)

PFAM:PF02901

RefSeq (EcoliWiki Page)

RefSeq:NP_418386


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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