kdsA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''kdsA'' | ''kdsA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1203, b1215, JW1206''<ref name='LIB:Riley_2006'/> | ''ECK1203, b1215, JW1206''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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KdsA<ref name='LIB:EcoCyc10.6'/>; 3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate synthase<ref name='LIB:EcoCyc11.1'/>; | KdsA<ref name='LIB:EcoCyc10.6'/>; 3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate synthase<ref name='LIB:EcoCyc11.1'/>; | ||
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3-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis<ref name='LIB:EcoGene'/> | 3-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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3-deoxy-D-manno-octulosonate 8-phosphate synthase<ref name='LIB:Riley_2006'/>, B1215<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 3-deoxy-D-manno-octulosonate 8-phosphate synthase<ref name='LIB:Riley_2006'/>, B1215<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0008676 3-deoxy-8-phosphooctulonate synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Cellular Component''' | |||
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:kdsA|kdsA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ychQA-kdsA|ychQA-kdsA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:kdsA|kdsA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ychQA-kdsA|ychQA-kdsA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=kdsA&loc=MG1655:1267388..1268242,W3110:1269742..1270596,DH10B:1307629..1308483,REL606:1268315..1269169 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1268315&end=1269169&gene=kdsA&aa=mkqkvvsigdinvandlpfvlfggmnvlesrdlamricehyvtvtqklgipyvfkasfdkanrssihsyrgpgleegmkifqelkqtfgvkiitdvhepsqaqpvadvvdviqlpaflarqtdlveamaktgavinvkkpqfvspgqmgnivdkfkeggnekvilcdrganfgydnlvvdmlgfsimkkvsgnspvifdvthalqcrdpfgaasggrraqvaelaragmavglaglfieahpdpehakcdgpsalplaklepflkqmkaiddlvkgfeeldtsk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsA+AND+escherichia+coli Pubmed(kdsA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=kdsA Textpresso(kdsA)] | |||
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Revision as of 23:48, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
kdsA |
|---|---|
| Gene Synonym(s) |
ECK1203, b1215, JW1206[1] |
| Product Desc. |
KdsA[2]; 3-deoxy-D-manno-octulosonate 8-phosphate synthase[3]; Component of [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase|3-deoxy-D-manno-octulosonic acid 8-phosphate synthase]][2]; [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase|3-deoxy-D-manno-octulosonate 8-phosphate synthase]][3] 3-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis[4] |
| Product Synonyms(s) |
3-deoxy-D-manno-octulosonate 8-phosphate synthase[1], B1215[2][1], KdsA[2][1] |
| Function from GO |
Molecular Function
Cellular Component
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): kdsA[2], ychQA-kdsA[2] |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
kdsA gutQ double mutants are non-viable and lack KDO; multicopy msbA, or unknown chromsomal mutation(s) in suppressed KDO-null strain KPM22, permit viabilty without KDO-containing LPS (Meredith, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.