gyrA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''gyrA''  
''gyrA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2223, b2231, JW2225, hisW, nalA, parD, nfxA, norA''<ref name='LIB:Riley_2006'/>
''ECK2223, b2231, JW2225, hisW, nalA, parD, nfxA, norA''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DNA gyrase, subunit A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
DNA gyrase, subunit A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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DNA gyrase, subunit A; nalidixic acid resistance; cold shock regulon<ref name='LIB:EcoGene'/>
DNA gyrase, subunit A; nalidixic acid resistance; cold shock regulon<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA gyrase (type II topoisomerase), subunit A<ref name='LIB:Riley_2006'/>, B2231<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NorA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NfxA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NalA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HisW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GyrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA gyrase (type II topoisomerase), subunit A<ref name='LIB:Riley_2006'/>, B2231<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NorA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NfxA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NalA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HisW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GyrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Cellular Component'''
* GO:0005624 membrane fraction ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005739 mitochondrion ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006261 DNA-dependent DNA replication ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042493 response to drug ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006265 DNA topological change ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0003918 DNA topoisomerase (ATP-hydrolyzing) activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003677 DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008094 DNA-dependent ATPase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:gyrA|gyrA]]<ref name='LIB:EcoCyc10.6'/>, OP00191  
transcription unit(s): [[:Category:Txn_unit:gyrA|gyrA]]<ref name='LIB:EcoCyc10.6'/>, OP00191  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=gyrA&loc=MG1655:2337442..2334815,W3110:2344090..2341463,REL606:2286120..2283493,DH10B:2428430..2425803 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2428430&end=2425803&gene=gyrA&aa=msdlareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitansadinledlitqedvvvtlshqgyvkyqplseyeaqrrggkgksaarikeedfidrllvanthdhilcfssrgrvysmkvyqlpeatrgargrpivnllpleqderitailpvtefeegvkvfmatangtvkktvltefnrlrtagkvaiklvdgdeligvdltsgedevmlfsaegkvvrfkessvramgcnttgvrgirlgegdkvvslivprgdgailtatqngygkrtavaeyptksratkgvisikvternglvvgavqvddcdqimmitdagtlvrtrvseisivgrntqgvilirtaedenvvglqrvaepvdeedldtidgsaaegddeiapevdvddepeee Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gyrA+AND+escherichia+coli Pubmed(gyrA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=gyrA Textpresso(gyrA)]


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Revision as of 23:53, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

gyrA

Gene Synonym(s)

ECK2223, b2231, JW2225, hisW, nalA, parD, nfxA, norA[1]

Product Desc.

DNA gyrase, subunit A[2][3];

Component of DNA gyrase[3]

DNA gyrase, subunit A; nalidixic acid resistance; cold shock regulon[4]

Product Synonyms(s)

DNA gyrase (type II topoisomerase), subunit A[1], B2231[2][1], ParD[2][1], NorA[2][1], NfxA[2][1], NalA[2][1], HisW[2][1], GyrA[2][1]

Function from GO

Cellular Component

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gyrA[2], OP00191

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(gyrA)    Textpresso(gyrA)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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gyrA is an essential gene. HT_Cmplx22_Cyt: DnaK+GrpE+GyrA+RpsA.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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