fadR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''fadR'' | ''fadR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1175, b1187, JW1176, dec, ole, thdB, oleR''<ref name='LIB:Riley_2006'/> | ''ECK1175, b1187, JW1176, dec, ole, thdB, oleR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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FadR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | FadR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Repressor/activator for fatty acid metabolism regulon; fatty acid-responsive transcription factor; fabAB, iclR activator (regulates aceBAK, glyoxylate shunt); fad repressor; homodimeric<ref name='LIB:EcoGene'/> | Repressor/activator for fatty acid metabolism regulon; fatty acid-responsive transcription factor; fabAB, iclR activator (regulates aceBAK, glyoxylate shunt); fad repressor; homodimeric<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional dual regulator of fatty acid metabolism<ref name='LIB:Riley_2006'/>, B1187<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ole<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dec<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThdB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OleR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FadR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, negative regulator for fad regulon, and positive activator of fabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional dual regulator of fatty acid metabolism<ref name='LIB:Riley_2006'/>, B1187<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ole<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dec<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThdB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OleR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FadR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, negative regulator for fad regulon, and positive activator of fabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:fadR|fadR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:fadR|fadR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=fadR&loc=MG1655:1234161..1234880,W3110:1236515..1237234,DH10B:1274402..1275121,REL606:1235088..1235807 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1235088&end=1235807&gene=fadR&aa=mvikaqspagfaeeyiiesiwnnrfppgtilpaerelseligvtrttlrevlqrlardgwltiqhgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknlpgdlaiqgr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fadR+AND+escherichia+coli Pubmed(fadR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=fadR Textpresso(fadR)] | |||
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Revision as of 00:01, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
fadR |
|---|---|
| Gene Synonym(s) |
ECK1175, b1187, JW1176, dec, ole, thdB, oleR[1] |
| Product Desc. |
FadR transcriptional dual regulator[2][3] Repressor/activator for fatty acid metabolism regulon; fatty acid-responsive transcription factor; fabAB, iclR activator (regulates aceBAK, glyoxylate shunt); fad repressor; homodimeric[4] |
| Product Synonyms(s) |
DNA-binding transcriptional dual regulator of fatty acid metabolism[1], B1187[2][1], Ole[2][1], Dec[2][1], ThdB[2][1], OleR[2][1], FadR[2][1], negative regulator for fad regulon, and positive activator of fabA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The fad genes are induced and fabAB, iclR are repressed by long chain acyl-CoA thioesters binding to and releasing FadR from the DNA. FadR is a GntR-type DNA-binding transcriptional regulator.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.