atoC:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
update QV table
Line 27: Line 27:


|-
|-
!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''atoC''  
''atoC''  
|-
|-
!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK2213, b2220, JW2214, Az''<ref name='LIB:Riley_2006'/>
''ECK2213, b2220, JW2214, Az''<ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
||
Response regulator for atoDAEB operon<ref name='[http:www.ecogene.org]'/>
Response regulator for atoDAEB operon<ref name='[http:www.ecogene.org]'/>
Line 41: Line 41:
Response regulator for atoDAEB operon; AtoS is the two-component cognate sensor protein; induced by acetoacetate; ornithine decarboxylase antizyme Az, polyamine-inducible<ref name='LIB:EcoGene'/>
Response regulator for atoDAEB operon; AtoS is the two-component cognate sensor protein; induced by acetoacetate; ornithine decarboxylase antizyme Az, polyamine-inducible<ref name='LIB:EcoGene'/>
|-
|-
!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
B2220<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
B2220<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
||
||
'''Biological Process'''
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IEP,IMP])
'''Molecular Function'''
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IEP,IMP])


|-
|-
!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
 
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:atoS|atoS]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:atoS|atoS]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[http://ecoliwiki.net/tools/display_dna.php?gene=atoC&loc=MG1655:2319888..2321273,W3110:2326536..2327921,REL606:2268566..2269951,DH10B:2410876..2412261 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2410876&end=2412261&gene=atoC&aa=mtainrilivddednvrrmlstafalqgfethcanngrtalhlfadihpdvvlmdirmpemdgikalkemrshetrtpvilmtayaevetavealrcgafdyvikpfdldelnlivqralqlqsmkkeirhlhqalstswqwghiltnspammdickdtakialsqasvlisgesgtgkeliaraihynsrrakgpfikvncaalpeslleselfghekgaftgaqtlrqglferanegtllldeigemplvlqakllrilqereferigghqtikvdiriiaatnrdlqamvkegtfredlfyrlnvihlilpplrdrredisllanhflqkfssenqrdiididpmamslltawswpgnirelsnvieravvmnsgpiifsedlppqirqpvcnagevktapvgernlkeeikrvekriimevleqqegnrtrtalmlgisrralmyklqeygidpadv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=atoC+AND+escherichia+coli Pubmed(atoC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=atoC Textpresso(atoC)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 00:10, 22 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

atoC

Gene Synonym(s)

ECK2213, b2220, JW2214, Az[1]

Product Desc.

Response regulator for atoDAEB operon[2]

Response regulator for atoDAEB operon; AtoS is the two-component cognate sensor protein; induced by acetoacetate; ornithine decarboxylase antizyme Az, polyamine-inducible[3]

Product Synonyms(s)

B2220[4][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): atoS[4]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(atoC)    Textpresso(atoC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Bifunctional bacterial antizyme AtoC(Az) binds to and inhibits ornithine decarboxylase. AtoCS mutants have lowered complexed poly-(R)-3-hydroxybutyrate (cPHB) levels: the ato operon is required for maximal cPHB production (Theodoroua, 2006).[3]



References

[back to top]


  1. ↑ 1.0 1.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named [http:www.ecogene.org]
  3. ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.0 4.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=atoC:Quickview&oldid=1032361"