acnA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''acnA''  
''acnA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1271, b1276, JW1268, acn''<ref name='LIB:Riley_2006'/>
''ECK1271, b1276, JW1268, acn''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Aconitase A, stationary phase induced; iron-sulfur cluster; apo-enzyme binds mRNA for negative translational autoregulation; negatively regulated by ryhB RNA as part of indirect positive regulation by Fur<ref name='LIB:EcoGene'/>
Aconitase A, stationary phase induced; iron-sulfur cluster; apo-enzyme binds mRNA for negative translational autoregulation; negatively regulated by ryhB RNA as part of indirect positive regulation by Fur<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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aconitate hydratase 1<ref name='LIB:Riley_2006'/>, B1276<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Acn<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AcnA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
aconitate hydratase 1<ref name='LIB:Riley_2006'/>, B1276<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Acn<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AcnA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0003994 aconitate hydratase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005506 iron ion binding ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0046872 metal ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0051539 4 iron, 4 sulfur cluster binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006979 response to oxidative stress ([http://www.geneontology.org/GO.evidence.shtml IEP,IDA])
* GO:0043556 regulation of translation in response to oxidative stress ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009061 anaerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:acnA|acnA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:acnA|acnA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=acnA&loc=MG1655:1333855..1336530,W3110:1337545..1340220,DH10B:1423251..1425926,REL606:1334203..1336878 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1334203&end=1336878&gene=acnA&aa=msstlreaskdtlqakdktyhyyslplaakslgditrlpkslkvllenllrwqdgnsvteedihalagwlknahadreiayrparvlmqdftgvpavvdlaamreavkrlggdtakvnplspvdlvidhsvtvdrfgddeafeenvrlemernheryvflkwgkqafsrfsvvppgtgichqvnleylgkavwselqdgewiaypdtlvgtdshttminglgvlgwgvggieaeaamlgqpvsmlipdvvgfkltgklregitatdlvltvtqmlrkhgvvgkfvefygdgldslpladratianmspeygatcgffpidavtldymrlsgrsedqvelvekyakaqgmwrnpgdepiftstleldmndveaslagpkrpqdrvalpdvpkafaasnelevnathkdrqpvdyvmnghqyqlpdgavviaaitsctntsnpsvlmaagllakkavtlglkrqpwvkaslapgskvvsdylakakltpyldelgfnlvgygcttcignsgplpdpietaikksdltvgavlsgnrnfegrihplvktnwlaspplvvayalagnmninlasepighdrkgdpvylkdiwpsaqeiaraveqvstemfrkeyaevfegtaewkginvtrsdtygwqedstyirlspffdemqatpapvedihgarilamlgdsvttdhispagsikpdspagrylqgrgverkdfnsygsrrgnhevmmrgtfanirirnemvpgveggmtrhlpdsdvvsiydaamrykqeqtplaviagkeygsgssrdwaakgprllgirvviaesferihrsnligmgilplefpqgvtrktlgltgeekidigdlqnlqpgatvpvtltradgsqevvpcrcridtateltyyqndgilhyvirnmlk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=acnA+AND+escherichia+coli Pubmed(acnA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=acnA Textpresso(acnA)]


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Revision as of 00:13, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

acnA

Gene Synonym(s)

ECK1271, b1276, JW1268, acn[1]

Product Desc.

Aconitase A, stationary phase induced; iron-sulfur cluster; apo-enzyme binds mRNA for negative translational autoregulation; negatively regulated by ryhB RNA as part of indirect positive regulation by Fur[2]

Product Synonyms(s)

aconitate hydratase 1[1], B1276[3][1], Acn[3][1], AcnA[3][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): acnA[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(acnA)    Textpresso(acnA)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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