glgX:Gene Product(s): Difference between revisions

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|-
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!align=left {{table heading style}} |Standard name
!align=left |Standard name
||
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GlgX  
GlgX  
|-
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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glycogen debranching enzyme<ref name='LIB:Riley_2006'/>, B3431<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GlgX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
glycogen debranching enzyme<ref name='LIB:Riley_2006'/>, B3431<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GlgX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left {{table heading style}} |Product description
!align=left |Product description
||
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EG10381<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EG10381<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Glycogen debranching enzyme<ref name='LIB:EcoGene'/>
Glycogen debranching enzyme<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
||
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.- 3.2.1.-]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.- 3.2.1.-]<ref name='LIB:Riley_2006'/>


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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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Experiment(s):EBI-1145878<br />  
Experiment(s):EBI-1145878<br />  


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!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
||
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[http://biocyc.org/ECOLI/sequence-aa?object=EG10381-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10381-MONOMER at EcoCyc]  
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ILLSDRFLIA INATLEVTEI VLPAGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR</pre>  
ILLSDRFLIA INATLEVTEI VLPAGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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657
657
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
||
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73.577 kDa
73.577 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
||
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6.1 (calculated)
6.1 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
||
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140,260 - 141,760 (calc based on 24 Y, 19 W, and 12 C residues)
140,260 - 141,760 (calc based on 24 Y, 19 W, and 12 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 01:21, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GlgX

Synonyms

glycogen debranching enzyme[1], B3431[2][1], GlgX[2][1]

Product description

EG10381[2][3]

Glycogen debranching enzyme[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006047
InterPro:IPR013780

F

Seeded from EcoCyc [5]

complete

GO:0004133

glycogen debranching enzyme activity

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR011837
HAMAP:MF_01248

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004193
InterPro:IPR011837

F

Seeded from EcoCyc [5]

complete

GO:0005975

carbohydrate metabolic process

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004193
InterPro:IPR006047
InterPro:IPR013780
SP_KW:KW-0119

P

Seeded from EcoCyc [5]

complete

GO:0005977

glycogen metabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0321

P

Seeded from EcoCyc [5]

complete

GO:0005980

glycogen catabolic process

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR011837
HAMAP:MF_01248

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0008152

metabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

P

Seeded from EcoCyc [5]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc [5]

complete

GO:0016798

hydrolase activity, acting on glycosyl bonds

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

F

Seeded from EcoCyc [5]

complete

GO:0043169

cation binding

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006047
InterPro:IPR013780

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016052

carbohydrate catabolic process

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0000271

polysaccharide biosynthetic process

P

Seeded from Riley et al 2006 [1].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

sprT

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

rplN

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

trpE

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

ygjQ

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

aceB

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

yhhX

PMID:16606699[7]

Experiment(s):EBI-1145878

Protein

waaU

PMID:16606699[7]

Experiment(s):EBI-1145878
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MTQLAIGKPA PLGAHYDGQG VNFTLFSAHA ERVELCVFDA NGQEHRYDLP GHSGDIWHGY
LPDARPGLRY GYRVHGPWQP AEGHRFNPAK LLIDPCARQI DGEFKDNPLL HAGHNEPDYR
DNAAIAPKCV VVVDHYDWED DAPPRTPWGS TIIYEAHVKG LTYLHPEIPV EIRGTYKALG
HPVMINYLKQ LGITALELLP VAQFASEPRL QRMGLSNYWG YNPVAMFALH PAYACSPETA
LDEFRDAIKA LHKAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI REDGDYHNWT
GCGNTLNLSH PAVVDYASAC LRYWVETCHV DGFRFDLAAV MGRTPEFRQD APLFTAIQNC
PVLSQVKLIA EPWDIAPGGY QVGNFPPLFA EWNDHFRDAA RRFWLHYDLP LGAFAGRFAA
SSDVFKRNGR LPSAAINLVT AHDGFTLRDC VCFNHKHNEA NGEENRDGTN NNYSNNHGKE
GLGGSLDLVE RRRDSIHALL TTLLLSQGTP MLLAGDEHGH SQHGNNNAYC QDNQLTWLDW
SQASSGLTAF TAALIHLRKR IPALVENRWW EEGDGNVRWL NRYAQPLSTD EWQNGPKQLQ
ILLSDRFLIA INATLEVTEI VLPAGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR
Length

657

Mol. Wt

73.577 kDa

pI

6.1 (calculated)

Extinction coefficient

140,260 - 141,760 (calc based on 24 Y, 19 W, and 12 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=glgX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10381-MONOMER

UniProt (EcoliWiki Page)

UniProt:P15067

PFAM (EcoliWiki Page)

PFAM:PF02922

RefSeq (EcoliWiki Page)

RefSeq:NP_417889


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

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