arnT:Gene Product(s): Difference between revisions

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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0000030
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mannosyltransferase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR003342
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F
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Seeded from EcoCyc
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complete
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GO:0005886
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plasma membrane
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GO_REF:0000020<br />GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01165<br />SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
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C
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Seeded from EcoCyc
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complete
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GO:0006493
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protein amino acid O-linked glycosylation
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR003342
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P
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Seeded from EcoCyc
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complete
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GO:0008610
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lipid biosynthetic process
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0444
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P
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Seeded from EcoCyc
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complete
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GO:0009103
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lipopolysaccharide biosynthetic process
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GO_REF:0000004<br />PMID:11535605
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IMP: Inferred from Mutant Phenotype
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SP_KW:KW-0448<br />
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P
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Seeded from EcoCyc
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complete
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GO:0009245
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lipid A biosynthetic process
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GO_REF:0000020<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01165<br />SP_KW:KW-0441
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P
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Seeded from EcoCyc
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complete
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GO:0010041
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response to iron(III) ion
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PMID:12139617<br />PMID:15322361
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IEP: Inferred from Expression Pattern
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UniProtKB:P30843<br />
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P
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Seeded from EcoCyc
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complete
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GO:0016020
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membrane
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GO_REF:0000002<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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InterPro:IPR003342<br />SP_KW:KW-0472
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C
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Seeded from EcoCyc
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complete
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GO:0016021
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integral to membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
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Seeded from EcoCyc
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complete
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GO:0016740
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transferase activity
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GO_REF:0000020<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01165<br />SP_KW:KW-0808
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F
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Seeded from EcoCyc
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complete
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GO:0016757
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transferase activity, transferring glycosyl groups
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0328
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F
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Seeded from EcoCyc
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complete
|-
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GO:0016763
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transferase activity, transferring pentosyl groups
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PMID:17928292
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IMP: Inferred from Mutant Phenotype
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F
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Seeded from EcoCyc
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complete  
complete  

Revision as of 17:45, 5 October 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ArnT

Synonyms

4-amino-4-deoxy-L-arabinose transferase[1], B2257[2][1], YfbI[2][1], ArnT[2][1], PmrK[2][1], Orf5[2][1]

Product description

4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase[2][3]

4-amino-4-deoxy-L-arabinose(Ara4N):Lipid A transferase; modifies lipid A phosphates with aminoarabinose and confers resistance to polymyxin B and cationic antimicrobial peptides; glycolipid donor is undecaprenyl phosphate-alpha-L-Ara4N[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016757

transferase activity, transferring glycosyl groups

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0328

F

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808
HAMAP:MF_01165

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR003342
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0009245

lipid A biosynthetic process

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0441
HAMAP:MF_01165

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0009103

lipopolysaccharide biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0448

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0008610

lipid biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0444

P

Seeded from EcoCyc [5]

complete

GO:0006493

protein amino acid O-linked glycosylation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003342

P

Seeded from EcoCyc [5]

complete

GO:0000030

mannosyltransferase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003342

F

Seeded from EcoCyc [5]

complete

GO:0009103

lipopolysaccharide biosynthetic process

PMID:11535605[7]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0010041

response to iron(III) ion

PMID:12139617[8]

IGI: Inferred from Genetic Interaction

UniProtKB:P30843

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0010041

response to iron(III) ion

PMID:15322361[9]

IEP: Inferred from Expression Pattern

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0016763

transferase activity, transferring pentosyl groups

PMID:17928292[10]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc [5]

complete

GO:0006950

response to stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005886

plasma membrane

GO_REF:0000020
GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

HAMAP:MF_01165
SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKSVRYLIGL FAFIACYYLL PISTRLLWQP DETRYAEISR EMLASGDWIV PHLLGLRYFE
KPIAGYWINS IGQWLFGANN FGVRAGVIFA TLLTAALVTW FTLRLWRDKR LALLATVIYL
SLFIVYAIGT YAVLDPFIAF WLVAGMCSFW LAMQAQTWKG KSAGFLLLGI TCGMGVMTKG
FLALAVPVLS VLPWVATQKR WKDLFIYGWL AVISCVLTVL PWGLAIAQRE PNFWHYFFWV
EHIQRFALDD AQHRAPFWYY VPVIIAGSLP WLGLLPGALY TGWKNRKHSA TVYLLSWTIM
PLLFFSVAKG KLPTYILSCF ASLAMLMAHY ALLAAKNNPL ALRINGWINI AFGVTGIIAT
FVVSPWGPMN TPVWQTFESY KVFCAWSIFS LWAFFGWYTL TNVEKTWPFA ALCPLGLALL
VGFSIPDRVM EGKHPQFFVE MTQESLQPSR YILTDSVGVA AGLAWSLQRD DIIMYRQTGE
LKYGLNYPDA KGRFVSGDEF ANWLNQHRQE GIITLVLSVD RDEDINSLAI PPADAIDRQE
RLVLIQYRPK
Length

550

Mol. Wt

62.544 kDa

pI

9.3 (calculated)

Extinction coefficient

189,760 - 190,635 (calc based on 24 Y, 28 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

tmhmm.php?gene=arnT&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=arnT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7170-MONOMER

UniProt (EcoliWiki Page)

UniProt:P76473

PFAM (EcoliWiki Page)

PFAM:PF02366

RefSeq (EcoliWiki Page)

RefSeq:NP_416760


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ Trent, MS et al. (2001) Accumulation of a polyisoprene-linked amino sugar in polymyxin-resistant Salmonella typhimurium and Escherichia coli: structural characterization and transfer to lipid A in the periplasm. J Biol Chem 276 43132-44 PubMed
  8. ↑ Chamnongpol, S et al. (2002) Fe(III)-mediated cellular toxicity. Mol. Microbiol. 45 711-9 PubMed
  9. ↑ Hagiwara, D et al. (2004) A Genome-wide view of the Escherichia coli BasS-BasR two-component system implicated in iron-responses. Biosci. Biotechnol. Biochem. 68 1758-67 PubMed
  10. ↑ Yan, A et al. (2007) An undecaprenyl phosphate-aminoarabinose flippase required for polymyxin resistance in Escherichia coli. J Biol Chem 282 36077-89 PubMed

Categories

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