EcoliWiki: Difference between revisions
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==Content== | ==Content== | ||
Most of the ''E. coli'' information was initially seeded with a subset of information from parsing [[EcoCyc]] data dumps. For phage λ and the F plasmid, [[Genbank]] accessions were converted to [http://www.sanger.ac.uk/Software/formats/GFF/ GFF], which was parsed into the appropriate tables. Other sources of content include: | |||
* user additions | |||
* monthly addition of annotations from [[EcoCyc]] | |||
* structural data from the [[PDB]] | |||
* domains and motif information from [[InterPro]] | |||
* various databases including [[EcoGene]], [[RegulonDB]], [[Genbank]], [[GenoBase]], [[ASAP]] | |||
* many many scientific papers | |||
==Using {{PAGENAME}}== | ==Using {{PAGENAME}}== | ||
===Browsing=== | ===Browsing=== | ||
Revision as of 22:40, 22 May 2009
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
| Link/URL: | |
|---|---|
| What: |
Wiki-based community annotation for E. coli K-12, as part of EcoliHub |
| Who: |
Jim Hu, Texas A&M University |
| Updates: |
As edited |
| Upcoming events: | |
| Web Services: |
REST services available |
| edit table |
About EcoliWiki
EcoliWiki is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.
Content
Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage λ and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:
- user additions
- monthly addition of annotations from EcoCyc
- structural data from the PDB
- domains and motif information from InterPro
- various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
- many many scientific papers
Using EcoliWiki
Browsing
Searching
Other Helpful Places
You can view a list of (semi-internal) pages about this project here.
Technology
Web Services/API
EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project (See: EcoliHub Workbench).
- keyword - currently searches based on a single keyword
- gene - prototype to extract gene details from the wiki
- is_edited - shows numbers of human revisions to EcoliWiki pages.
For more detail about the EcoliWiki web services, see Help:Web Services.