fdoI:Gene Product(s): Difference between revisions
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C | C | ||
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Seeded from EcoCyc | |||
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complete | |||
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GO:0006810 | |||
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transport | |||
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GO_REF:0000004 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-0813 | |||
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P | |||
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Seeded from EcoCyc | Seeded from EcoCyc | ||
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GO: | GO:0008863 | ||
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formate dehydrogenase activity | |||
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GO_REF: | GO_REF:0000002 | ||
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IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
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InterPro:IPR006471 | |||
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F | |||
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Seeded from EcoCyc | Seeded from EcoCyc | ||
Revision as of 00:13, 22 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
FdoI |
|---|---|
| Synonyms |
formate dehydrogenase-O, cytochrome b556 subunit[1], B3892[2][1], FdoI[2][1] |
| Product description |
formate dehydrogenase-O, γ subunit[2][3]; Component of formate dehydrogenase-O[2][3] Formate dehydrogenase-O cytochrome b556 subunit, aerobic[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0045333 |
cellular respiration |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0009326 |
formate dehydrogenase complex |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0008863 |
formate dehydrogenase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005506 |
iron ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0009053 |
electron donor activity |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc [5] |
complete | ||
| GO:0009055 |
electron carrier activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0022900 |
electron transport chain |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0022904 |
respiratory electron transport chain |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005506 |
iron ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc |
complete | ||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0017004 |
cytochrome complex assembly |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009061 |
anaerobic respiration |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0008863 |
formate dehydrogenase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of formate dehydrogenase-O |
could be indirect |
| |
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 4 predicted transmembrane domains |
Daley et al. (2005) [7] |
|
|
plasma membrane |
From EcoCyc[3] | ||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKRRDTIVRY TAPERINHWI TAFCFILAAV SGLGFLFPSF NWLMQIMGTP QLARILHPFV GVVMFASFII MFFRYWHHNL INRDDIFWAK NIRKIVVNEE VGDTGRYNFG QKCVFWAAII FLVLLLVSGV IIWRPYFAPA FSIPVIRFAL MLHSFAAVAL IVVIMVHIYA ALWVKGTITA MVEGWVTSAW AKKHHPRWYR EVRKTTEKKA E |
|---|---|
| Length |
211 |
| Mol. Wt |
24.61 kDa (calc) [2] |
| pI |
10.33[2] |
| Extinction coefficient |
63940 - 64190 (calc based on 6 Y, 10 W, and 2 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/>
|
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>fdoI 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
- ↑ 8.0 8.1 8.2 8.3 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed
Categories
- GO:0046872 ! metal ion binding
- GO:0045333 ! cellular respiration
- GO:0016021 ! integral component of membrane
- GO:0016020 ! membrane
- GO:0009326 ! formate dehydrogenase complex
- GO:0008863 ! formate dehydrogenase (NAD+) activity
- GO:0006810 ! transport
- GO:0005506 ! iron ion binding
- GO:0009053 ! electron donor activity
- GO:0005886 ! plasma membrane
- GO:0009055 ! electron transfer activity
- GO:0022900 ! electron transport chain
- GO:0022904 ! respiratory electron transport chain
- GO:0017004 ! cytochrome complex assembly
- GO:0009061 ! anaerobic respiration
- TMHMM Prediction
- Proteins
- Complex:formate dehydrogenase-O
- Location:plasma membrane