prkB:Gene Product(s): Difference between revisions

Standard name	PrkB
Synonyms	predicted phosphoribulokinase^[1], B3355^[2]^[1], YhfF^[2]^[1], PrkB^[2]^[1]
Product description	predicted phosphoribulokinase^[2]^[3] Putative phosphoribulokinase^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016740	transferase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0016301	kinase activity	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR006083 SP_KW:KW-0418	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0009058	biosynthetic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	P	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0008974	phosphoribulokinase activity	GO_REF:0000002 GO_REF:0000003	IEA: Inferred from Electronic Annotation	InterPro:IPR006082 EC:2.7.1.19	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006082	P	Seeded from EcoCyc ^[6]	complete
	GO:0005524	ATP binding	GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR006082 InterPro:IPR006083 SP_KW:KW-0067	F	Seeded from EcoCyc ^[6]	complete
	GO:0000166	nucleotide binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc ^[6]	complete
	GO:0006006	glucose metabolic process				P	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0008974	phosphoribulokinase activity		HINF		F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0008152	metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	P	Seeded from EcoCyc ^[6]	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	dapB	PMID:16606699^[7]	Experiment(s):EBI-1145680
Protein	purC	PMID:16606699^[7]	Experiment(s):EBI-1145680
Protein	groL	PMID:16606699^[7]	Experiment(s):EBI-1145680
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR DAGRHISYFG PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL PEPTDVLFYE GLHGGVVTPQ HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM DSVVRSMEDY INYITPQFSR THLNFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE
Mol. Wt	32.34 kDa (calc) ^[2]
pI
Extinction coefficient	33920 (calc based on 8 Y, 4 W, and 0 C residues)
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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG12365-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P0AEX5
UniProt (EcoliWiki Page)	UniProt:P0AEX5
PFAM (EcoliWiki Page)	PFAM:PF00485
RefSeq (EcoliWiki Page)	RefSeq:NP_417814
ModBase (EcoliWiki Page)	ModBase:P0AEX5
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^6.0 ^6.1 ^6.2 ^6.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^7.0 ^7.1 ^7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

prkB:Gene Product(s): Difference between revisions

Revision as of 09:09, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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+complete
+|-
+|
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+GO:0005975
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+carbohydrate metabolic process
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+GO_REF:0000002
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+IEA: Inferred from Electronic Annotation
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+InterPro:IPR006082
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+P
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+Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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 complete
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-GO:0005975
+GO:0008152
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-carbohydrate metabolic process
+metabolic process
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 GO_REF:0000002
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 IEA: Inferred from Electronic Annotation
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-InterPro:IPR006082
+InterPro:IPR006083
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 P

prkB:Gene Product(s): Difference between revisions

Revision as of 09:09, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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