rpoS:Expression: Difference between revisions

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[[:Category:Txn_unit:rpoS|rpoS]]  
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===Notes===
===Notes===
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
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microarray  
microarray
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[http://genexpdb.ou.edu/index.php?query=b2741 GenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])  
[[geoprofiles:b2741|GEO Profiles:b2741]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
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Summary of data for rpoS from multiple microarray studies 
NCBI GEO profiles for ''rpoS''
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microarray
microarray  
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[[geoprofiles:b2741|GEO Profiles:b2741]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
[http://genexpdb.ou.edu/index.php?query=b2741 GenExpDB:b2741] ([[EcoliGenExpDB|EcoliWiki Page]])  
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NCBI GEO profiles for ''rpoS''
Summary of data for rpoS from multiple microarray studies 


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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
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<protect><!--Expression_experimental_notes--></protect>
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===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10510 EcoCyc:EG10510]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0505 EchoBASE:EB0505]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://genexpdb.ou.edu/index.php?query=b2741 GenExpDB:b2741]
[http://chase.ou.edu/macro/searchlink.php?bnum=b2741 EcoliGenExpDB:b2741]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
[http://ecogene.org/geneinfo.php?eg_id=EG10510 EcoGene:EG10510]
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===Notes===
===Notes===
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==References==
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__NOTOC__
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Revision as of 07:29, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpoS

nlpD-rpoS

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Figure courtesy of RegulonDB


Notes

Note: This image from RegulonDB is wrong. nlpD should begin just downstream of the nlpDp1 and nlpDp2 promoters. See Figure 2 of Hengge-Aronis (2002)[1] ; see also the rpoS EcoCyc entry.

Translation and Regulation of Translation

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gbrowse_img.php?coord=2865553..2865593&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2741 (EcoliWiki Page)

NCBI GEO profiles for rpoS

microarray

GenExpDB:b2741 (EcoliWiki Page)

Summary of data for rpoS from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2865488..2865716) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:F12[2]

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<protect>

Notes

Accessions Related to rpoS Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10510

EchoBASE (EcoliWiki Page)

EchoBASE:EB0505

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2741

EcoGene (EcoliWiki Page)

EcoGene:EG10510


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Hengge-Aronis, R (2002) Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66 373-95, table of contents PubMed
  2. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed


Categories

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