yjgJ:Gene Product(s): Difference between revisions

Standard name	YjgJ product
Synonyms	predicted transcriptional regulator product^[1], B4251 product^[2]^[1], YjgJ product^[2]^[1]
Product description	hypothetical protein^[2]; predicted transcriptional regulator^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003677	DNA binding	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR012287 SP_KW:KW-0238	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0003700	transcription factor activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001647	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0030528	transcription regulator activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR001647 SP_KW:KW-0805	P	Seeded from EcoCyc 12.5 ^[4]	complete
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MVLEGIHSHD PQARDIAVQY YHAAETTIYD YIARRHPQRA QCVTDFMSTV MSGLSAKARE GHSIEQLCAT AAMAGEAIKT ILEE
Mol. Wt	21.5 kDa (calc) ^[2]
pI
Extinction coefficient	5960 - 6210 (calc based on 4 Y, 0 W, and 2 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
Domain	15 - 75	HTH tetR-type	UniProt:P39334
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Structure

Structures

Models

View models at:

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G7882-MONOMER
UniProt (EcoliWiki Page)	UniProt:P39334
PFAM (EcoliWiki Page)	PFAM:PF00440
RefSeq (EcoliWiki Page)	RefSeq:NP_418672
ModBase (EcoliWiki Page)	ModBase:P39334
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 111: / Line 111: @@
 |
 F
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
+|-
+|
+|
+[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
+|
+transcription
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.uniprot.org/keywords/KW-0804 SP_KW:KW-0804]
+|
+P
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
@@ Line 138: / Line 157: @@
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-[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
+[[Category:GO:0006355_!_regulation_of_transcription,_DNA-dependent]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006355_!_regulation_of_transcription,_DNA-dependent GO:0006355]
 |
-transcription
+regulation of transcription, DNA-dependent
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.uniprot.org/keywords/KW-0804 SP_KW:KW-0804]
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001647 InterPro:IPR001647]<br />[http://www.uniprot.org/keywords/KW-0805 SP_KW:KW-0805]
 |
 P

yjgJ:Gene Product(s): Difference between revisions

Revision as of 08:07, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

yjgJ:Gene Product(s): Difference between revisions

Revision as of 08:07, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search