Sequenced E. coli Genomes: Difference between revisions

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Table edited by Siegele via TableEdit
Table edited by Bmcintosh via TableEdit
Line 97: Line 97:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI]  
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml JCVI]  
<br/>
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>


Line 112: Line 113:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
Enteroinvasive.
Enteroinvasive.
Line 126: Line 128:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml B171 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
Enteropathogenic.  
Enteropathogenic.  
Line 139: Line 142:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml B7A at JCVI]<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
Enterotoxigenic.  
Enterotoxigenic.  
Line 152: Line 156:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml E110019 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>


Line 166: Line 171:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml E22 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
Enteropathogenic.  
Enteropathogenic.  
Line 179: Line 185:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml E24377A at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
Enterotoxigenic.  
Enterotoxigenic.  
Line 192: Line 199:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml F11 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
Extra-intestinal pathogenic.  
Extra-intestinal pathogenic.  
Line 205: Line 213:
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml HS at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
Human commensal isolate.  
Human commensal isolate.  
Line 233: Line 242:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4024/index.shtml EC4024 at JCVI]  <br/>
[http://msc.jcvi.org/o157h7/ec4024/index.shtml JCVI]  <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
Enterohemorrhagic.  
Enterohemorrhagic.  
Line 246: Line 256:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4042/index.shtml EC4042 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4042/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27737 Entrez Genome Project] <br/>  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27737 Entrez Genome Project] <br/>  
Enterohemorrhagic.
Enterohemorrhagic.
Line 261: Line 272:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4045/index.shtml EC4045 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4045/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
Enterohemorrhagic.
Enterohemorrhagic.
Line 275: Line 287:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4076/index.shtml EC4076 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4076/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
Line 289: Line 302:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4113/index.shtml EC4113 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4113/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
Line 303: Line 317:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4115/index.shtml EC4115 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4115/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
<br/>Enterohemorrhagic.  
<br/>Enterohemorrhagic.  
Line 316: Line 331:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4196/index.shtml EC4196 at JCVI ]<br/>
[http://msc.jcvi.org/o157h7/ec4196/index.shtml JCVI ]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
Line 475: Line 491:
<br/>
<br/>
[http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
[http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>  
|-  
|-  
Line 499: Line 516:
no
no
|
|
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)]  
<br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
<br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
Enteroaggregative.  
Enteroaggregative.  
Line 516: Line 534:
[http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
[http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
<br/>
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
Uropathogenic.  
Uropathogenic.  
Line 547: Line 566:
<br/>
<br/>
[http://www.genome.wisc.edu/sequencing/upec.htm University of Wisconsin Genome Center]<br/>
[http://www.genome.wisc.edu/sequencing/upec.htm University of Wisconsin Genome Center]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=313 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=313 Entrez Genome Project] <br/>
Uropathogenic.  
Uropathogenic.  
Line 561: Line 581:
''E. coli'' Crooks strain (sometimes misnamed as ''E. coli'' B strain (see page for [http://ecoliwiki.net/colipedia/index.php/ATCC_8739 ATCC 8739])<br/>
''E. coli'' Crooks strain (sometimes misnamed as ''E. coli'' B strain (see page for [http://ecoliwiki.net/colipedia/index.php/ATCC_8739 ATCC 8739])<br/>
[http://genome.ornl.gov/microbial/ecol_c/ Joint Genome Institute]<br/>
[http://genome.ornl.gov/microbial/ecol_c/ Joint Genome Institute]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>


Line 575: Line 596:
|
|
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]<br/>
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=341 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=341 Entrez Genome Project]<br/>
Enteropathogenic.  
Enteropathogenic.  
Line 660: Line 682:
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>


|-
|
''E. coli'' O157:H7 EDL933
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_002655.2 NC_002655.2]
|
no
|
[http://www.ericbrc.org/portal/eric/escherichiaGenomeDetail Enteropathogen Resource Integration Center (ERIC)] <br/>
Enterohemorrhagic.
|-
|
''E. coli'' 078:H11 H10407
|
complete
|
|
no
|
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
Enterohemorrhagic.
|-
|
''E. coli'' O157:H7 Sakai
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_002695.1 NC_002695.1]
|
no
|
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)]
Enterohemorrhagic.
   
   


Revision as of 19:22, 14 November 2008

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Strain Sequencing status Accessions (if applicable) In EcoliWiki Comments

MG1655

complete

NC_000913

yes

PMID:9278503[1]

W3110

complete

AC_000091

yes

PMID:16738553[2]

DH10B

complete

NC_010473

not yet

PMID:18245285[3]

This genome will be loaded as soon as possible -

Nov 11, 2008

Escherichia coli (B) REL606

in progress

not yet

Will be included in EcoliWiki when made publically available.
International E. coli B Consortium
Entrez Genome Project

E. coli BL21 (DE3)

in progress

not yet

Will be included in EcoliWiki when publically available.
DOE Joint Genome Institute
Entrez Genome Project

E. coli BL21(DE3)

in progress

not yet

Will be included in EcoliWiki when publically available.
Korea Research Institute of Bioscience and Biotechnology
Entrez Genome Project

E. coli 101-1

in progress

Whole Genome Shotgun Sequence 101-1

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Enteroaggregative.

E. coli 53638

in progress

Whole Genome Shotgun Sequence 53638

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroinvasive.

E. coli B171

in progress

Whole Genome Shotgun Sequence B171

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

E. coli B7A

in progress

Whole Genome Shotgun Sequence B7A

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

E. coli E110019

in progress

Whole Genome Shotgun Sequence E110019

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Atypical enteropathogenic.

E. coli E22

in progress

Whole Genome Shotgun Sequence E22

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

E. coli E24377A

complete

NC_009801

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

E. coli F11

in progress

Whole Genome Shotgun Sequence F11

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Extra-intestinal pathogenic.

E. coli HS

complete

NC_009800

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Human commensal isolate.

E. coli SMS-3-5

complete

NC_010498

no

PMID:18708504[4]
SECEC SMS-3-5 at JCVI
Entrez Genome Project
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.

E. coli O157:H7 EC4024

in progress

Whole Genome Shotgun Sequence EC4024

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4042

in progress

Whole Genome Shotgun Sequence EC4042

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.


E. coli O157:H7 EC4045

in progress

Whole Genome Shotgun Sequence EC4045

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4076

in progress

Whole Genome Shotgun Sequence EC4076

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4113

in progress

Whole Genome Shotgun Sequence EC4113

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4115

complete

NC_011353

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4196

in progress

Whole Genome Shotgun Sequence EC4196

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4206

in progress

Whole Genome Shotgun Sequence EC4206

no

EC4206 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4401

in progress

Whole Genome Shotgun Sequence EC4401

no

EC4401 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4486

in progress

Whole Genome Shotgun Sequence EC4486

no

EC4486 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC4501

in progress

Whole Genome Shotgun Sequence EC4501

no

EC4501 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC508

in progress

Whole Genome Shotgun Sequence EC508

no

EC508 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 TW14359

in progress

no

Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 EC869

in progress

Whole Genome Shotgun Sequence EC869

no

EC869 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 FRIK966

in progress

no

MBRI
Entrez Genome Project
Bovine isolate; does not express Shiga toxin.

E. coli O157:H7 TW14588

in progress

Whole Genome Shotgun Sequence TW14588

no

TW14588 at JCVI
Entrez Genome Project
Enterohemorrhagic.

E. coli O157:H7 GZ-021210/cattle

in progress

no

Entrez Genome Project
Enterohemorrhagic bovine isolate.

E. coli O157:H7

complete

NC_002695

no

PMID:11258796[5]
Entrez Genome Project

E. coli APEC O1

complete

NC_008563

no

PMID:17293413[6]
Nolan Lab Bacterial Pathogenesis Laboratory
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

E. coli UTI89

complete

NC_007946

no

PMID:16585510[7]
Entrez Genome Project

E. coli 042

in progress

no

Sanger Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroaggregative.

E. coli 536

complete

NC_008253

no

PMID:16879640[8]
University of Gottingen
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

E. coli RS218

in progress

no

PMID:16988236[9]
University of Wisconsin Genome Center
Entrez Genome Project
E. coli K1; Neonatal meningitis E. coli (NMEC).

E. coli CFT073

complete

NC_004431

no

PMID:12471157[10]
University of Wisconsin Genome Center
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

E. coli ATCC 8739

complete

NC_010468

not yet

E. coli Crooks strain (sometimes misnamed as E. coli B strain (see page for ATCC 8739)
Joint Genome Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project


E. coli E2348/69

complete

no

Sanger Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

E. coli F18+

in progress

no

Entrez Genome Project

E. coli 789 A/C 1

in progress

no

Gottingen Genomics Laboratory

E. coli LW1655F+

in progress

no

Entrez Genome Project


E. coli NC-7

in progress

not yet

Entrez Genome Project
Cell wall-less L-form derivative of E. coli K-12.

E. coli SE11

complete

NC_011415

no

Entrez Genome Project
Human commensal isolate.

E. coli W

in progress

no

Entrez Genome Project

E. coli c7122

in progress

no

Entrez Genome Project


E. coli O157:H7 EDL933

complete

NC_002655.2

no

Enteropathogen Resource Integration Center (ERIC)

Enterohemorrhagic.

E. coli 078:H11 H10407

complete

no

Enteropathogen Resource Integration Center (ERIC)

Enterohemorrhagic.

E. coli O157:H7 Sakai

complete

NC_002695.1

no

Enteropathogen Resource Integration Center (ERIC)

Enterohemorrhagic.


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  1. ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
  2. ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
  3. ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
  4. ↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
  5. ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
  6. ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
  7. ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
  8. ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
  9. ↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
  10. ↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed
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