Sequenced E. coli Genomes: Difference between revisions
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EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although | EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains. Although pathogenic strains of ''E. coli'' are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and where. Please add or edit any strains you know are being sequenced or are finished. | ||
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Revision as of 01:19, 12 November 2008
EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and where. Please add or edit any strains you know are being sequenced or are finished.
| Strain | Sequencing status | Accessions (if applicable) | In EcoliWiki | Comments |
|---|---|---|---|---|
|
complete |
yes |
|||
|
complete |
yes |
|||
|
complete |
not yet |
This genome will be loaded as soon as possible - Nov 11, 2008 | ||
|
Escherichia coli (B) REL606 |
in progress |
not yet |
Will be included in EcoliWiki when made publically available. | |
|
E. coli BL21 (DE3) |
in progress |
not yet |
Will be included in EcoliWiki when publically available. | |
|
E. coli BL21(DE3) |
in progress |
not yet |
Will be included in EcoliWiki when publically available. | |
|
E. coli 101-1 |
in progress |
no |
E. coli 101-1 from JCVI
Enteroaggregative. | |
|
E. coli 53638 |
in progress |
no |
53638 at JCVI | |
|
E. coli B171 |
in progress |
no |
B171 at JCVI | |
|
E. coli B7A |
in progress |
no |
B7A at JCVI | |
|
E. coli E110019 |
in progress |
no |
E110019 at JCVI Atypical enteropathogenic. | |
|
E. coli E22 |
in progress |
no |
E22 at JCVI | |
|
E. coli E24377A |
complete |
no |
E24377A at JCVI | |
|
E. coli F11 |
in progress |
no |
F11 at JCVI | |
|
E. coli HS |
complete |
no |
HS at JCVI | |
|
E. coli SMS-3-5 |
complete |
no |
PMID:18708504[4]
| |
|
E. coli O157:H7 EC4024 |
in progress |
no |
EC4024 at JCVI | |
|
E. coli O157:H7 EC4042 |
in progress |
no |
EC4042 at JCVI
| |
|
E. coli O157:H7 EC4045 |
in progress |
no |
EC4045 at JCVI | |
|
E. coli O157:H7 EC4076 |
in progress |
no |
EC4076 at JCVI | |
|
E. coli O157:H7 EC4113 |
in progress |
no |
EC4113 at JCVI | |
|
E. coli O157:H7 EC4115 |
complete |
no |
EC4115 at JCVI | |
|
E. coli O157:H7 EC4196 |
in progress |
no |
EC4196 at JCVI | |
|
E. coli O157:H7 EC4206 |
in progress |
no |
EC4206 at JCVI | |
|
E. coli O157:H7 EC4401 |
in progress |
no |
EC4401 at JCVI | |
|
E. coli O157:H7 EC4486 |
in progress |
no |
EC4486 at JCVI | |
|
E. coli O157:H7 EC4501 |
in progress |
no |
EC4501 at JCVI | |
|
E. coli O157:H7 EC508 |
in progress |
no |
EC508 at JCVI | |
|
E. coli O157:H7 TW14359 |
in progress |
no |
Entrez Genome Project | |
|
E. coli O157:H7 EC869 |
in progress |
no |
EC869 at JCVI | |
|
E. coli O157:H7 FRIK966 |
in progress |
no |
MBRI | |
|
E. coli O157:H7 TW14588 |
in progress |
no |
TW14588 at JCVI | |
|
E. coli O157:H7 GZ-021210/cattle |
in progress |
no |
Entrez Genome Project | |
|
E. coli O157:H7 |
complete |
no |
||
|
E. coli APEC O1 |
complete |
no |
PMID:17293413[6]
| |
|
E. coli UTI89 |
complete |
no |
||
|
E. coli 042 |
in progress |
no |
Sanger Institute
| |
|
E. coli 536 |
complete |
no |
PMID:16879640[8]
| |
|
E. coli RS218 |
in progress |
no |
PMID:16988236[9]
| |
|
E. coli CFT073 |
complete |
no |
PMID:12471157[10]
| |
|
E. coli ATCC 8739 |
complete |
not yet |
E. coli B strain
| |
|
E. coli E2348/69 |
complete |
no |
Sanger Institute | |
|
E. coli F18+ |
in progress |
no |
||
|
E. coli 789 A/C 1 |
in progress |
no |
||
|
E. coli LW1655F+ |
in progress |
no |
| |
|
E. coli NC-7 |
in progress |
not yet |
Entrez Genome Project | |
|
E. coli SE11 |
complete |
no |
Entrez Genome Project | |
|
E. coli W |
in progress |
no |
||
|
E. coli c7122 |
in progress |
no |
| |
| edit table |
- ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
- ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
- ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
- ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
- ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
- ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
- ↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
- ↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed