Sequenced E. coli Genomes: Difference between revisions

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Table edited by Bmcintosh via TableEdit
Table edited by Bmcintosh via TableEdit
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
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no
not yet
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[[PMID:18245285]]<ref name=PMID:18245285/>
[[PMID:18245285]]<ref name=PMID:18245285/>
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no
not yet
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 E. coli Genome Projects] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 E. coli Genome Projects] <br/>
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no
not yet
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
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no
not yet
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology]  <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology]  <br/>
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI] <br/>


Pathogenic.
Enteroaggregative.


   
   
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/>


Pathogenic.  
Enteroinvasive.
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''E. coli'' B171
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in progress
|
 
|
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml B171 at JCVI] <br/>
Enteropathogenic.
|-
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''E. coli'' B7A
|
in progress
|
 
|
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml B7A at JCVI]<br/>
Enterotoxigenic.
|-
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''E. coli'' E110019
|
in progress
|
 
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml E110019 at JCVI] <br/>
 
Atypical enteropathogenic.
|-
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''E. coli'' E22
|
in progress
|
 
|
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml E22 at JCVI] <br/>
 
Enteropathogenic.
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''E. coli'' E24377A
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in progress
|
 
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml E24377A at JCVI] <br/>
Enterotoxigenic.
|-
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''E. coli'' F11
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in progress
|
 
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml F11 at JCVI] <br/>
Extra-intestinal pathogenic.
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''E. coli'' HS
|
in progress
|
 
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml HS at JCVI] <br/>
Human commensal isolate.
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''E. coli'' SECEC SMS-3-5
|
in progress
|
 
|
no
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_secec_sms_3_5/index.shtml SECEC SMS-3-5 at JCVI] <br/>
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.
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''E. coli'' O157:H7 EC4024
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in progress
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=5906 Whole Genome Shotgun Sequence EC4024]
|
no
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[http://msc.jcvi.org/o157h7/ec4024/index.shtml EC4024 at JCVI]  <br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC4042
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHM00000000 Whole Genome Shotgun Sequence EC4042]
|
no
|
[http://msc.jcvi.org/o157h7/ec4042/index.shtml EC4042 at JCVI] <br/>
Enterohemorrhagic.
 
|-
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''E. coli'' O157:H7 EC4045
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHL00000000 Whole Genome Shotgun Sequence EC4045]
|
no
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[http://msc.jcvi.org/o157h7/ec4045/index.shtml EC4045 at JCVI] <br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC4076
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHQ00000000 Whole Genome Shotgun Sequence EC4076]
|
no
|
[http://msc.jcvi.org/o157h7/ec4076/index.shtml EC4076 at JCVI] <br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC4113
|
in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHP00000000 Whole Genome Shotgun Sequence EC4113]
|
no
|
[http://msc.jcvi.org/o157h7/ec4113/index.shtml EC4113 at JCVI]<br/>
Enterohemorrhagic.
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''E. coli'' O157:H7 EC4115
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complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_011353  NC_011353]
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no
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[http://msc.jcvi.org/o157h7/ec4115/index.shtml EC4115 at JCVI]
<br/>Enterohemorrhagic.
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''E. coli'' O157:H7 EC4196
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in progress
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHO00000000 Whole Genome Shotgun Sequence EC4196]
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no
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[http://msc.jcvi.org/o157h7/ec4196/index.shtml EC4196 at JCVI ]<br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC4206
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in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHK00000000 Whole Genome Shotgun Sequence EC4206]
|
no
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[http://msc.jcvi.org/o157h7/ec4206/index.shtml EC4206 at JCVI]
<br/> Enterohemorrhagic.
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''E. coli'' O157:H7 EC4401
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in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHR00000000 Whole Genome Shotgun Sequence EC4401]
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no
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[http://msc.jcvi.org/o157h7/ec4401/index.shtml EC4401 at JCVI] <br/>
Enterohemorrhagic. 
|-
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''E. coli'' O157:H7 EC4486
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in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHS00000000 Whole Genome Shotgun Sequence EC4486]
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no
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[http://msc.jcvi.org/o157h7/ec4486/index.shtml EC4486 at JCVI]<br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC4501
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in progress
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_ABHT00000000 Whole Genome Shotgun Sequence EC4501]
|
no
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[http://msc.jcvi.org/o157h7/ec4501/index.shtml EC4501 at JCVI] <br/>
Enterohemorrhagic. 
|-
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''E. coli'' O157:H7 EC508
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complete
|
 
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no
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[http://msc.jcvi.org/o157h7/ec508/index.shtml EC508 at JCVI]<br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 EC869
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complete
|
 
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no
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[http://msc.jcvi.org/o157h7/ec869/index.shtml EC869 at JCVI]<br/>
Enterohemorrhagic.
|-
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''E. coli'' O157:H7 TW14588
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in progress
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no
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[http://msc.jcvi.org/o157h7/tw14588/index.shtml TW14588 at JCVI] <br/>
Enterohemorrhagic.  


|-class='sortbottom'
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Revision as of 21:45, 11 November 2008

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although the pathogenic strains of E. coli will not be put into EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or the projects are in progress. Use this table to track which genomes are available and where they are available from. Please add any strains you know are being sequenced or are finished.

Strain Sequencing status Accessions (if applicable) In EcoliWiki Comments

MG1655

complete

NC_000913

yes

PMID:9278503[1]

W3110

complete

AC_000091

yes

PMID:16738553[2]

DH10B

complete

NC_010473

not yet

PMID:18245285[3]

This genome will be loaded as soon as possible -

Nov 11, 2008

Escherichia coli (B) REL606

in progress

not yet

E. coli Genome Projects
Will be included in EcoliWiki when made publically available.

E. coli BL21 (DE3)

in progress

not yet

DOE Joint Genome Institute
Will be included in EcoliWiki when publically available.

E. coli BL21(DE3)

in progress

not yet

Korea Research Institute of Bioscience and Biotechnology
Will be included in EcoliWiki when publically available.

E. coli 101-1

in progress

no

E. coli 101-1 from JCVI

Enteroaggregative.


E. coli 53638

in progress

no

53638 at JCVI

Enteroinvasive.

E. coli B171

in progress

no

B171 at JCVI
Enteropathogenic.

E. coli B7A

in progress

no

B7A at JCVI
Enterotoxigenic.

E. coli E110019

in progress

no

E110019 at JCVI

Atypical enteropathogenic.

E. coli E22

in progress

no

E22 at JCVI

Enteropathogenic.

E. coli E24377A

in progress

no

E24377A at JCVI
Enterotoxigenic.

E. coli F11

in progress

no

F11 at JCVI
Extra-intestinal pathogenic.

E. coli HS

in progress

no

HS at JCVI
Human commensal isolate.

E. coli SECEC SMS-3-5

in progress

no

SECEC SMS-3-5 at JCVI
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.

E. coli O157:H7 EC4024

in progress

Whole Genome Shotgun Sequence EC4024

no

EC4024 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4042

in progress

Whole Genome Shotgun Sequence EC4042

no

EC4042 at JCVI
Enterohemorrhagic.


E. coli O157:H7 EC4045

in progress

Whole Genome Shotgun Sequence EC4045

no

EC4045 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4076

in progress

Whole Genome Shotgun Sequence EC4076

no

EC4076 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4113

in progress

Whole Genome Shotgun Sequence EC4113

no

EC4113 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4115

complete

NC_011353

no

EC4115 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4196

in progress

Whole Genome Shotgun Sequence EC4196

no

EC4196 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4206

in progress

Whole Genome Shotgun Sequence EC4206

no

EC4206 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4401

in progress

Whole Genome Shotgun Sequence EC4401

no

EC4401 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4486

in progress

Whole Genome Shotgun Sequence EC4486

no

EC4486 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC4501

in progress

Whole Genome Shotgun Sequence EC4501

no

EC4501 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC508

complete

no

EC508 at JCVI
Enterohemorrhagic.

E. coli O157:H7 EC869

complete

no

EC869 at JCVI
Enterohemorrhagic.

E. coli O157:H7 TW14588

in progress

no

TW14588 at JCVI
Enterohemorrhagic.

edit table
  1. ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
  2. ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
  3. ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
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