Sequenced E. coli Genomes: Difference between revisions
No edit summary |
Table edited by Bmcintosh via TableEdit |
||
| Line 33: | Line 33: | ||
| | | | ||
[[PMID:16738553]]<ref name=PMID:16738553/> | [[PMID:16738553]]<ref name=PMID:16738553/> | ||
|- | |||
| | |||
[[DH10B]] | |||
| | |||
complete | |||
| | |||
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473] | |||
| | |||
no | |||
| | |||
[[PMID:18245285]]<ref name=PMID:18245285/> | |||
This genome will be loaded as soon as possible - | |||
Nov 11, 2008 | |||
|- | |||
| | |||
''Escherichia coli'' (B) REL606 | |||
| | |||
in progress | |||
| | |||
| | |||
no | |||
| | |||
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 E. coli Genome Projects] <br/> | |||
Will be included in EcoliWiki when made publically available. | |||
|- | |||
| | |||
''E. coli'' BL21 (DE3) | |||
| | |||
in progress | |||
| | |||
| | |||
no | |||
| | |||
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/> | |||
Will be included in EcoliWiki when publically available. | |||
|- | |||
| | |||
''E. coli'' BL21(DE3) | |||
| | |||
in progress | |||
| | |||
| | |||
no | |||
| | |||
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology] <br/> | |||
Will be included in EcoliWiki when publically available. | |||
|- | |||
| | |||
''E. coli'' 101-1 | |||
| | |||
in progress | |||
| | |||
| | |||
no | |||
| | |||
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI] <br/> | |||
Pathogenic. | |||
|- | |||
| | |||
''E. coli'' 53638 | |||
| | |||
in progress | |||
| | |||
| | |||
no | |||
| | |||
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/> | |||
Pathogenic. | |||
|-class='sortbottom' | |-class='sortbottom' | ||
Revision as of 20:56, 11 November 2008
EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although the pathogenic strains of E. coli will not be put into EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or the projects are in progress. Use this table to track which genomes are available and where they are available from. Please add any strains you know are being sequenced or are finished.
| Strain | Sequencing status | Accessions (if applicable) | In EcoliWiki | Comments |
|---|---|---|---|---|
|
complete |
yes |
|||
|
complete |
yes |
|||
|
complete |
no |
This genome will be loaded as soon as possible - Nov 11, 2008 | ||
|
Escherichia coli (B) REL606 |
in progress |
no |
E. coli Genome Projects | |
|
E. coli BL21 (DE3) |
in progress |
no |
DOE Joint Genome Institute | |
|
E. coli BL21(DE3) |
in progress |
no |
Korea Research Institute of Bioscience and Biotechnology | |
|
E. coli 101-1 |
in progress |
no |
Pathogenic.
| |
|
E. coli 53638 |
in progress |
no |
Pathogenic. | |
| edit table |
- ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
- ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed