ybaP:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
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YbaP product  
YbaP product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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conserved protein product<ref name='LIB:Riley_2006'/>, B0482 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaP product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
conserved protein product<ref name='LIB:Riley_2006'/>, B0482 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaP product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
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putative ligase<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>
putative ligase<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6258-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6258-MONOMER at EcoCyc]  
<pre>MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHFHLIGSI HMGSHDMAPL PTRLLKKLKN
<pre>MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHFHLIGSI HMGSHDMAPL PTRLLKKLKN
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PGRYVVAVGA LHLYGEGNLP QMLR</pre>  
PGRYVVAVGA LHLYGEGNLP QMLR</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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29.9 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
29.9 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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48930 - 49055 (calc based on 7 Y, 7 W, and 1 C residues)  
48930 - 49055 (calc based on 7 Y, 7 W, and 1 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6258-MONOMER EcoCyc:G6258-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6258-MONOMER EcoCyc:G6258-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:P77301|UniProt:P77301]]
[[uniprot:P77301|UniProt:P77301]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF07446 PFAM:PF07446]
[http://pfam.sanger.ac.uk/family?acc=PF07446 PFAM:PF07446]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415015 RefSeq:NP_415015]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415015 RefSeq:NP_415015]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 00:38, 5 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YbaP product

Synonyms

conserved protein product[1], B0482 product[2][1], YbaP product[2][1]

Product description

putative ligase[2]; conserved protein[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHFHLIGSI HMGSHDMAPL PTRLLKKLKN
ADALIVEADV STSDTPFANL PACEALEERI SEEQLQNLQH ISQEMGISPS LFSTQPLWQI
AMVLQATQAQ KLGLRAEYGI DYQLLQAAKQ QHKPVIELEG AENQIAMLLQ LPDKGLALLD
DTLTHWHTNA RLLQQMMSWW LNAPPQNNDI TLPNTFSQSL YDVLMHQRNL AWRDKLRAMP
PGRYVVAVGA LHLYGEGNLP QMLR
Mol. Wt

29.9 kDa (calc) [2]

pI
Extinction coefficient

48930 - 49055 (calc based on 7 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>ybaP 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6258-MONOMER

UniProt (EcoliWiki Page)

UniProt:P77301

PFAM (EcoliWiki Page)

PFAM:PF07446

RefSeq (EcoliWiki Page)

RefSeq:NP_415015


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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