ykfG:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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YkfG product  
YkfG product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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CP4-6 prophage; predicted DNA repair protein product<ref name='LIB:Riley_2006'/>, B0247 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YkfG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
CP4-6 prophage; predicted DNA repair protein product<ref name='LIB:Riley_2006'/>, B0247 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YkfG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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putative DNA repair protein<ref name='LIB:EcoCyc10.6'/>; CP4-6 prophage; predicted DNA repair protein<ref name='LIB:EcoCyc11.1'/>
putative DNA repair protein<ref name='LIB:EcoCyc10.6'/>; CP4-6 prophage; predicted DNA repair protein<ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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|- {{table_heading_style}}
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
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[[Category:GO:0005515_!_protein_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005515_!_protein_binding GO:0005515]
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protein_binding
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[[PMID:16606699]]<ref name=PMID:16606699/><br />
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IPI: Inferred from Physical Interaction
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UniProtKB:P0AE60
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0006281_!_DNA_repair]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006281_!_DNA_repair GO:0006281]
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DNA_repair
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001405
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6122-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6122-MONOMER at EcoCyc]  
<pre>MKQLSFLPGE MTPQDRRLIQ RALRALDRHL HEPGVAFTST HAVREWLRLH MAALEREEFR
<pre>MKQLSFLPGE MTPQDRRLIQ RALRALDRHL HEPGVAFTST HAVREWLRLH MAALEREEFR
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KTLTQRLVQV LQLVDIRVPD HLIVGGRQIY SFAEHGLL</pre>  
KTLTQRLVQV LQLVDIRVPD HLIVGGRQIY SFAEHGLL</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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18.1 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
18.1 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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8480 (calc based on 2 Y, 1 W, and 0 C residues)  
8480 (calc based on 2 Y, 1 W, and 0 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6122-MONOMER EcoCyc:G6122-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6122-MONOMER EcoCyc:G6122-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:Q47685|UniProt:Q47685]]
[[uniprot:Q47685|UniProt:Q47685]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF04002 PFAM:PF04002]
[http://pfam.sanger.ac.uk/family?acc=PF04002 PFAM:PF04002]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414781 RefSeq:NP_414781]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414781 RefSeq:NP_414781]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
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[http://BioCyc.org/ECOO157/new-image?object=Z1657-MONOMER ECOO157CYC:Z1657-MONOMER]
[http://BioCyc.org/ECOO157/new-image?object=Z1657-MONOMER ECOO157CYC:Z1657-MONOMER]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 01:20, 5 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YkfG product

Synonyms

CP4-6 prophage; predicted DNA repair protein product[1], B0247 product[2][1], YkfG product[2][1]

Product description

putative DNA repair protein[2]; CP4-6 prophage; predicted DNA repair protein[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MKQLSFLPGE MTPQDRRLIQ RALRALDRHL HEPGVAFTST HAVREWLRLH MAALEREEFR
VLYLDNQNQL IAHETLFTGT INRTEVHPRE VVKRALHFNA AAVILAHNHP SGETTPSQAD
KTLTQRLVQV LQLVDIRVPD HLIVGGRQIY SFAEHGLL
Mol. Wt

18.1 kDa (calc) [2]

pI
Extinction coefficient

8480 (calc based on 2 Y, 1 W, and 0 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>ykfG 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6122-MONOMER

UniProt (EcoliWiki Page)

UniProt:Q47685

PFAM (EcoliWiki Page)

PFAM:PF04002

RefSeq (EcoliWiki Page)

RefSeq:NP_414781

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z1657-MONOMER


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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