prkB:Gene Product(s): Difference between revisions

Standard name	PrkB product
Synonyms	predicted phosphoribulokinase product^[1], B3355 product^[2]^[1], YhfF product^[2]^[1], PrkB product^[2]^[1]
Product description	predicted phosphoribulokinase^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016301	kinase_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0016301	kinase_activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0418	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005524	ATP_binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005975	carbohydrate_metabolism	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006082	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0008974	phosphoribulokinase_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006082	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0008974	phosphoribulokinase_activity	GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.7.1.19	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0009058	biosynthesis	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0000166	nucleotide_binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005524	ATP_binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006082	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005524	ATP_binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0006006	glucose metabolic process				P	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0008974	phosphoribulokinase activity		HINF		F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016740	transferase_activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR DAGRHISYFG PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL PEPTDVLFYE GLHGGVVTPQ HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM DSVVRSMEDY INYITPQFSR THLNFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE
Mol. Wt	32.34 kDa (calc) ^[2]
pI
Extinction coefficient	33920 (calc based on 8 Y, 4 W, and 0 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG12365-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P0AEX5
UniProt (EcoliWiki Page)	UniProt:P0AEX5
PFAM (EcoliWiki Page)	PFAM:PF00485
RefSeq (EcoliWiki Page)	RefSeq:NP_417814
ModBase (EcoliWiki Page)	ModBase:P0AEX5
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.00 ^4.01 ^4.02 ^4.03 ^4.04 ^4.05 ^4.06 ^4.07 ^4.08 ^4.09 ^4.10 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

prkB:Gene Product(s): Difference between revisions

Revision as of 04:30, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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 InterPro:IPR006083
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+F
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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+|-
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+[[Category:GO:0016301_!_kinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016301_!_kinase_activity GO:0016301]
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+kinase_activity
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+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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+IEA: Inferred from Electronic Annotation
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+SP_KW:KW-0418
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 F
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-[[Category:GO:0016301_!_kinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016301_!_kinase_activity GO:0016301]
+[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
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-kinase_activity
+transferase_activity
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 [http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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 IEA: Inferred from Electronic Annotation
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-SP_KW:KW-0418
+SP_KW:KW-0808
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 F

prkB:Gene Product(s): Difference between revisions

Revision as of 04:30, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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