ndk:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
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''Apis mellifera''   
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''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
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''Canis familiaris''   
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''Ciona intestinalis''   
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''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
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''Macaca mulatta''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
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''Rattus norvegicus''   
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''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00334 PFAM:PF00334]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00334 PFAM:PF00334]
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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<references/>
<references/>
<noinclude>
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Revision as of 21:54, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011253 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012462 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G09320 (score: 1.000; bootstrap: 88%)
  • AT5G63310 (score: 0.314)
  • AT4G11010 (score: 0.305)
  • AT4G23900 (score: 0.300)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022012 (score: 1.000; bootstrap: 96%)
  • ENSBTAP00000006104 (score: 0.450)
  • ENSBTAP00000021907 (score: 0.427)
  • ENSBTAP00000022066 (score: 0.307)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025328 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009119 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023323 (score: 1.000; bootstrap: 88%)
  • ENSCAFP00000025499 (score: 1.000; bootstrap: 88%)
  • ENSCAFP00000006112 (score: 0.866)
  • ENSCAFP00000000055 (score: 0.778)
  • ENSCAFP00000023696 (score: 0.763)
  • ENSCAFP00000028829 (score: 0.356)
  • ENSCAFP00000029117 (score: 0.314)
  • ENSCAFP00000006446 (score: 0.294)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002194 (score: 1.000; bootstrap: 94%)
  • ENSCINP00000011619 (score: 0.543)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000210-34 (score: 1.000; bootstrap: 93%)
  • ZDB-CDNA-040801-184 (score: 1.000; bootstrap: 92%)
  • ZDB-CDNA-040425-581 (score: 0.454)
  • ZDB-GENE-000210-32 (score: 0.436)
  • ZDB-CDNA-040425-1577 (score: 0.399)
  • ZDB-GENE-030131-7656 (score: 0.399)
  • ZDB-CDNA-040425-567 (score: 0.376)
  • ZDB-GENE-000210-33 (score: 0.376)
  • ZDB-CDNA-040425-1975 (score: 0.307)
  • ZDB-GENE-040426-1043 (score: 0.307)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185051 (score: 1.000; bootstrap: 99%)
  • DDB0217316 (score: 1.000; bootstrap: 99%)
  • DDB0214817 (score: 0.256)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0000150 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18797-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003531 (score: 1.000; bootstrap: 72%)
  • ENSGALP00000034078 (score: 0.440)
  • ENSGALP00000011810 (score: 0.393)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000219302 (score: 1.000; bootstrap: 95%)
  • ENSP00000337060 (score: 0.445)
  • ENSP00000312446 (score: 0.423)
  • ENSP00000219479 (score: 0.336)
  • ENSP00000242630 (score: 0.273)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002594 (score: 1.000; bootstrap: 90%)
  • ENSMMUP00000005145 (score: 0.301)
  • ENSMMUP00000000824 (score: 0.268)
  • ENSMMUP00000025232 (score: 0.207)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020158 (score: 1.000; bootstrap: 94%)
  • ENSMODP00000015750 (score: 0.458)
  • ENSMODP00000020808 (score: 0.369)
  • ENSMODP00000015743 (score: 0.360)

From Inparanoid:20070104

Mus musculus

  • MGI:1930182 (score: 1.000; bootstrap: 93%)
  • MGI:97355 (score: 0.406)
  • MGI:97356 (score: 0.397)
  • MGI:3648428 (score: 0.374)
  • MGI:1931148 (score: 0.338)

From Inparanoid:20070104

Oryza gramene

  • Q9AY50 (score: 1.000; bootstrap: 89%)
  • Q7XC37 (score: 1.000; bootstrap: 88%)
  • Q9LKM0 (score: 0.817)
  • P93554 (score: 0.806)
  • Q6ZHK3 (score: 0.706)
  • Q07661 (score: 0.706)
  • Q6DQV1 (score: 0.700)
  • Q762A0 (score: 0.456)
  • Q5TKF4 (score: 0.356)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015997 (score: 1.000; bootstrap: 94%)
  • ENSPTRP00000009382 (score: 0.478)
  • ENSPTRP00000015998 (score: 0.098)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021650 (score: 1.000; bootstrap: 94%)
  • ENSRNOP00000003611 (score: 1.000; bootstrap: 92%)
  • ENSRNOP00000003658 (score: 0.854)
  • ENSRNOP00000001641 (score: 0.693)
  • ENSRNOP00000039639 (score: 0.609)
  • ENSRNOP00000009166 (score: 0.573)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL067W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8067 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150656 (score: 1.000; bootstrap: 93%)
  • NEWSINFRUP00000159513 (score: 1.000; bootstrap: 92%)
  • NEWSINFRUP00000129296 (score: 0.375)
  • NEWSINFRUP00000158595 (score: 0.304)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004660001 (score: 1.000; bootstrap: 92%)
  • GSTENP00021805001 (score: 0.491)
  • GSTENP00035067001 (score: 0.303)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000024764 (score: 1.000; bootstrap: 72%)
  • ENSXETP00000022726 (score: 0.369)

From Inparanoid:20070104

Shigella flexneri

NDK

From SHIGELLACYC

E. coli O157

NDK

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00334


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Notes

Links

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Name URL Comments
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References

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Categories

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