dtd:Gene Product(s): Difference between revisions

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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>
</noinclude>[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009451_!_RNA modification]][[Category:GO:0006805_!_xenobiotic metabolic process]][[Category:GO:0006399_!_tRNA metabolic process]]
==Nomenclature==
==Nomenclature==
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!{{table heading style}} |Synonyms
!{{table heading style}} |Synonyms
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|
D-tyr-tRNA(Tyr) deacylase<ref name='LIB:Riley_2006'/>, B3887<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dtd<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YihZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
D-tyr-tRNA(Tyr) deacylase product<ref name='LIB:Riley_2006'/>, B3887 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dtd product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YihZ product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!{{table heading style}} |Product description
!{{table heading style}} |Product description
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D-Tyr-tRNA<sup>Tyr</sup> deacylase<ref name='LIB:EcoCyc10.6'/>; D-Tyr-tRNA<sup>Tyr</sup> deacylase<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:D-Tyr-tRNA<sup>Tyr</sup> deacylase|D-Tyr-tRNA<sup>Tyr</sup> deacylase]]<ref name='LIB:EcoCyc11.1'/>; D-Tyr-tRNA<sup>Tyr</sup> deacylase<ref name='LIB:EcoCyc11.1'/>
D-Tyr-tRNA<sup>Tyr</sup> deacylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
 
Component of ; [[:Category:Complex:D-Tyr-tRNA<sup>Tyr</sup> deacylase|D-Tyr-tRNA<sup>Tyr</sup> deacylase]]<ref name='LIB:EcoCyc11.1'/>


|-
|-
!{{table heading style}} |EC number (for enzymes)
!{{table heading style}} |EC number (for enzymes)
|
|
*[http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=3.1.-.- 3.1.-.-]<ref name='LIB:Riley_2006'/>
** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=3.1.-.- 3.1.-.-]<ref name='LIB:Riley_2006'/>
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==Function==
==Function==
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===Gene Ontology===
<big>'''Gene Ontology'''</big>
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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===Interactions===
 
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<span id="Interactions"></span><big>'''Interactions'''</big>
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!Partner Type!!Partner!!Notes
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could be indirect   
could be indirect   
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===Notes===
===Notes===


==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
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===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
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===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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9970 - 10220 (calc based on 3 Y, 1 W, and 2 C residues)  
9970 - 10220 (calc based on 3 Y, 1 W, and 2 C residues)  
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===Domains/Motifs/Modification Sites===
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
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!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
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===Structure===
 
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<span id="Structure"></span><big>'''Structure'''</big>
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
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==Gene Product Resources==
==Gene Product Resources==
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===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
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==Links==
==Links==
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==References==
==References==
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__NOTOC__
__NOTOC__
[[Category:GO:0005737]][[Category:GO:0009451]][[Category:GO:0006805]][[Category:GO:0006399]][[Category:Complex:D-Tyr-tRNA<sup>Tyr</sup> deacylase]]</noinclude>
</noinclude>

Revision as of 20:20, 28 July 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

Dtd product

Synonyms

D-tyr-tRNA(Tyr) deacylase product[1], B3887 product[2][1], Dtd product[2][1], YihZ product[2][1]

Product description

D-Tyr-tRNATyr deacylase[2][3];

Component of ; [[:Category:Complex:D-Tyr-tRNATyr deacylase|D-Tyr-tRNATyr deacylase]][3]

EC number (for enzymes)
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Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009451

RNA modification

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006805

xenobiotic metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006399

tRNA metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes

Protein

Subunits of [[:Category:Complex:D-Tyr-tRNATyr deacylase|D-Tyr-tRNATyr deacylase]]

could be indirect

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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MIALIQRVTR ASVTVEGEVT GEIGAGLLVL LGVEKDDDEQ KANRLCERVL GYRIFSDAEG
KMNLNVQQAG GSVLVVSQFT LAADTERGMR PSFSKGASPD RAEALYDYFV ERCRQQEMNT
QTGRFAADMQ VSLVNDGPVT FWLQV
Mol. Wt

15.95 kDa (calc) [2]

pI
Extinction coefficient

9970 - 10220 (calc based on 3 Y, 1 W, and 2 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Escherichia coli

1JKE D-Tyr tRNATyr deacylase from Escherichia coli

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11852-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A6M4

PFAM (EcoliWiki Page)

PFAM:PF02580

RefSeq (EcoliWiki Page)

RefSeq:NP_418323

ModBase (EcoliWiki Page)

ModBase:P0A6M4

PDB (EcoliWiki Page)

PDB:1JKE

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


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