glnA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418306&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418306&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019490 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000014914 (score: 0.575)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015737 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G53180 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039586 (score: 1.000; bootstrap: 100%)
  • WBGene00039664 (score: 1.000; bootstrap: 100%)
  • WBGene00039019 (score: 0.806)
  • WBGene00034517 (score: 0.579)
  • WBGene00035212 (score: 0.463)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001607 (score: 1.000; bootstrap: 100%)
  • WBGene00001606 (score: 1.000; bootstrap: 100%)
  • WBGene00001603 (score: 0.806)
  • WBGene00001604 (score: 0.582)
  • WBGene00001602 (score: 0.426)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011993 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-339 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-8417 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-340 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-338 (score: 0.897)
  • ZDB-GENE-030131-688 (score: 0.893)
  • ZDB-CDNA-041212-74 (score: 0.632)
  • ZDB-GENE-041212-65 (score: 0.632)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013857 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000005819 (score: 0.577)

From Inparanoid:20070104

Oryza gramene

  • Q5MD07 (score: 1.000; bootstrap: 97%)
  • Q7XDQ4 (score: 0.808)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR035W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137325 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000151139 (score: 0.727)

From Inparanoid:20070104

Shigella flexneri

GLNA

From SHIGELLACYC

E. coli O157

GLNA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF03951

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Notes

Links

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Name URL Comments
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References

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Categories

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