sspA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417696&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417696&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000009071 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G78380 (score: 1.000; bootstrap: 79%)
  • AT1G17180 (score: 0.734)
  • AT1G78370 (score: 0.707)
  • AT1G78360 (score: 0.675)
  • AT1G78340 (score: 0.667)
  • AT1G17170 (score: 0.653)
  • AT1G78320 (score: 0.631)
  • AT1G17190 (score: 0.610)
  • AT1G53680 (score: 0.528)
  • AT3G43800 (score: 0.463)
  • AT1G10360 (score: 0.220)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005211 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000017435 (score: 0.378)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039326 (score: 1.000; bootstrap: 52%)
  • WBGene00023684 (score: 0.402)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001790 (score: 1.000; bootstrap: 53%)
  • WBGene00001791 (score: 0.519)
  • WBGene00021817 (score: 0.437)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015576 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-365 (score: 1.000; bootstrap: 70%)
  • ZDB-CDNA-040718-400 (score: 1.000; bootstrap: 71%)
  • ZDB-CDNA-041114-67 (score: 0.714)
  • ZDB-GENE-041114-67 (score: 0.714)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035587 (score: 1.000; bootstrap: 46%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18310-PA (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000032508 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000278062 (score: 1.000; bootstrap: 100%)
  • ENSP00000334683 (score: 0.767)
  • ENSP00000345023 (score: 0.610)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020110 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000020113 (score: 0.592)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006704 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1341859 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Oryza gramene

  • O24595 (score: 1.000; bootstrap: 69%)
  • Q9SES7 (score: 0.672)
  • Q8RW02 (score: 0.664)
  • Q8RW03 (score: 0.662)
  • Q8RW04 (score: 0.659)
  • Q9FQC0 (score: 0.623)
  • Q9ZP61 (score: 0.618)
  • O65032 (score: 0.611)
  • Q9FUE5 (score: 0.547)
  • Q69RL1 (score: 0.539)
  • Q60DP1 (score: 0.407)
  • Q7Y1E0 (score: 0.071)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005155 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000026521 (score: 0.765)
  • ENSPTRP00000005157 (score: 0.605)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000017186 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000016851 (score: 0.499)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000154150 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024925001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041366 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

SSPA

From SHIGELLACYC

E. coli O157

SSPA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF02798

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Notes

Links

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Name URL Comments
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References

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Categories

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