yeeJ:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416485&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416485&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:01, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000004338 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008641 (score: 0.053)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010897 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000019305 (score: 0.177)
  • ENSBTAP00000019306 (score: 0.098)
  • ENSBTAP00000022802 (score: 0.058)
  • ENSBTAP00000038541 (score: 0.053)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019435 (score: 1.000; bootstrap: 100%)
  • WBGene00022536 (score: 0.091)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001906 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000002018 (score: 0.069)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036181 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000333437 (score: 1.000; bootstrap: 100%)
  • ENSP00000343037 (score: 0.053)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024517 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000035004 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR151C (score: 1.000; bootstrap: 100%)
  • YIR019C (score: 0.120)
  • YMR317W (score: 0.093)
  • YAR050W (score: 0.088)
  • YAL063C (score: 0.087)
  • YJR150C (score: 0.065)
  • YNR044W (score: 0.063)
  • YKR102W (score: 0.057)
  • YCR089W (score: 0.057)
  • YDL038C (score: 0.053)
  • YHR211W (score: 0.052)
  • YOL155C (score: 0.051)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002975 (score: 1.000; bootstrap: 68%)
  • ENSXETP00000013190 (score: 0.357)
  • ENSXETP00000006570 (score: 0.149)
  • ENSXETP00000006678 (score: 0.105)
  • ENSXETP00000038070 (score: 0.099)
  • ENSXETP00000010781 (score: 0.096)
  • ENSXETP00000040914 (score: 0.084)
  • ENSXETP00000037152 (score: 0.064)
  • ENSXETP00000041065 (score: 0.062)
  • ENSXETP00000047044 (score: 0.062)
  • ENSXETP00000033733 (score: 0.051)

From Inparanoid:20070104

E. coli O157

Z3135

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF02369

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Notes

Links

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Name URL Comments
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References

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Categories

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