tolA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415267&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415267&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012554 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005636 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G12780 (score: 1.000; bootstrap: 62%)
  • AT4G12770 (score: 0.819)
  • AT1G75310 (score: 0.188)
  • AT1G21660 (score: 0.172)
  • AT4G36520 (score: 0.156)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030862 (score: 1.000; bootstrap: 88%)
  • WBGene00030863 (score: 0.443)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006436 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004064 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0232250 (score: 1.000; bootstrap: 95%)
  • DDB0216653 (score: 0.074)
  • DDB0232136 (score: 0.056)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA22048-PA (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013000 (score: 1.000; bootstrap: 75%)
  • ENSMODP00000023350 (score: 0.153)

From Inparanoid:20070104

Mus musculus

  • MGI:97309 (score: 1.000; bootstrap: 63%)
  • MGI:97314 (score: 0.182)
  • MGI:96568 (score: 0.130)
  • MGI:97313 (score: 0.111)
  • MGI:98932 (score: 0.105)
  • MGI:94885 (score: 0.097)
  • MGI:97774 (score: 0.091)
  • MGI:95697 (score: 0.089)
  • MGI:96705 (score: 0.058)
  • MGI:3045312 (score: 0.051)
  • MGI:96704 (score: 0.051)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC17C93 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028759001 (score: 1.000; bootstrap: 68%)
  • GSTENP00030688001 (score: 0.178)
  • GSTENP00010435001 (score: 0.143)
  • GSTENP00028290001 (score: 0.129)
  • GSTENP00038963001 (score: 0.111)
  • GSTENP00023158001 (score: 0.085)

From Inparanoid:20070104

Shigella flexneri

TOLA

From SHIGELLACYC

E. coli O157

TOLA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF06519

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Notes

Links

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Name URL Comments
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References

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Categories

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