Revision as of 17:28, 13 August 2006

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FAMSBASE
Who:	Hideaki Umeyama, Kitasato University Mitiko Go, Nagahama Institute of Bio-Science and Technology Japan
What:	Protein structure models by homology modeling
Where:	FAMSBASE
Updates
Upcoming events	n/a
Web Services

About FAMSBASE

Content

FAMSBASE^[1] provides automated homology modeling of protein structures.

Using FAMSBASE

FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.

Browsing

Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.

Searching

Usage examples

Add links to additional pages describing success stories here.

Technology

Web Services/API

Discussion

References

↑ Yamaguchi, A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res. 31 463-8 PubMed

External Links

FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/

Discussion of FAMSBASE on other websites

[PMID:12520053-1] Yamaguchi, A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res. 31 463-8 PubMed

[1]

@@ Line 32: / Line 32: @@
 FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
 ==Browsing==
-Following the public login link, many queries take you to a page that asks you to create an account.  However, without creating an account, you can view a list of Proteins with FAMSBASE models.  This can be restricted to a particular genome by clicking a checkbox for the desired genome.  The output gives psiblast scores and links to [[PDB]] and [[GTOP]].
+Following the public login link, many queries take you to a page that asks you to create an account.  However, without creating an account, you can view a list of Proteins with FAMSBASE models.  This can be restricted to a particular genome by clicking a checkbox for the desired genome.  The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to [[GTOP]]. The ones I tested did not link properly to [[GTOP]].
 ==Searching==

FAMSBASE: Difference between revisions