dedD:Gene: Difference between revisions

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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
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!Resource!!Resource Type!!Source!!Notes/Reference
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JW5378
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>
Status:Clone OK
Primer 1:GCCGCAAGTAAGTTTCAGAATCG
Primer 2:CCATTCGGCGTATAGCCCATTAC
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==Links==
==Links==
 
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<references/>
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__NOTOC__
__NOTOC__
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[[Category:Gene List:MG1655]][[Category:Gene List:W3110]][[Category:Genes in the Keio knockout collection]][[Category:Genes in the ASKA clone collection]]</protect></noinclude>

Revision as of 07:14, 25 July 2007


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

Standard name

dedD

Mnemonic
Synonyms

ECK2308, b2314, JW5378[1]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

52.35 minutes 

MG1655: 2429706..2429044
gbrowse_img.php?coord=2428044..2430706&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2437130..2436468
gbrowse_img.php?coord=2435468..2438130&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference CGSC Mutation ID #

 

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

Resource Resource Type Source Notes/Reference

JW5378

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCGCAAGTAAGTTTCAGAATCG

Primer 2:CCATTCGGCGTATAGCCCATTAC

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10218

EchoBASE (EcoliWiki Page)

EchoBASE:EB0214

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2314

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2859

EcoGene (EcoliWiki Page)

EcoGene:EG10218

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:DEDD

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
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