yncK 2:Gene: Difference between revisions

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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
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!Resource!!Resource Type!!Source!!Notes/Reference
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>
Status:
Primer 1:
Primer 2:
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==Links==
==Links==
 
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__NOTOC__
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[[Category:Gene List:MG1655]][[Category:Gene List:W3110]][[Category:Genes in the Keio knockout collection]][[Category:Genes in the ASKA clone collection]]</protect></noinclude>

Revision as of 05:49, 25 July 2007


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

Standard name

yncK_2

Mnemonic
Synonyms

yncK, ECK1425, b4530, JW5227, b4531, JW5961, b4578, JW5227+JW5961, yncK_1[1][2][3]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

32.36 minutes 

MG1655: 1501334..1501167
gbrowse_img.php?coord=1500167..1502334&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 1505024..1504857
gbrowse_img.php?coord=1503857..1506024&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

32.36 minutes 

MG1655: 1501673..1501386
gbrowse_img.php?coord=1500386..1502673&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 1505363..1505076
gbrowse_img.php?coord=1504076..1506363&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

 

MG1655: 1501673..1501167
gbrowse_img.php?coord=1500167..1502673&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 1505363..1504857
gbrowse_img.php?coord=1503857..1506363&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference CGSC Mutation ID #

 

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G0-10557

EcoGene (EcoliWiki Page)

EcoGene:EG14359

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
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