Phage lambda nu1:Gene: Difference between revisions

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Latest revision as of 20:54, 19 September 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda nu1

Mnemonic
Synonyms

nu1, lambdap01

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_001416

NC_001416: 191..736
gbrowse_img.php?coord=191..736&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

Phage lambda

bp 191

Edman degradation

Tomka and Catalano (1993) J. Biol. Chem. 268: 3056-3065.

gpNu1 end established by N-terminal sequencing.

encodes helix-turn-helix motif

Phage lambda

bp 203-262 encode helix-turn-helix DNA binding motif

NMR structure

deBeer, et al. (2002) Mol. Cell 9:305-315

encodes wing

Phage lambda

bp 280-307 encode wing of winged helix-turn-helix DNA binding motif.

NMR structure

deBeer et al. (2002) Mol. Cell 9:305-315

Hwang and Feiss (1997) Virology 231:524-535

Mutations affecting gpNu1 wing residue lysine-35 alter the strength and specificity of holoterminase interactions with DNA.

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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