rhaM:Gene: Difference between revisions
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!align=left {{table_heading_style}} |Synonyms | !align=left {{table_heading_style}} |Synonyms | ||
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''yiiL, ECK3894, b3901, JW3872''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ''yiiL, ECK3894, b3901, JW3872''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW3872'' | ||
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!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11865 ECOCYC:EG11865] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | |||
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[http://ecogene.org/geneinfo.php?eg_id=EG11865 EcoGene:EG11865] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]]) | |||
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[http://www.ncbi.nlm.nih.gov/gene?term=948402 GeneID:948402] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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Revision as of 22:16, 24 September 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
rhaM |
|---|---|
| Mnemonic |
Rhamnose |
| Synonyms | |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
88.18 minutes |
MG1655: 4091461..4091147 |
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|
NC_012967: 4072882..4073196 |
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|
NC_012759: 3980816..3981130 |
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|
W3110 |
|
W3110: 3543243..3543557 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
rhaMY18F |
Y18F |
Loss of mutarotase activity |
seeded from UniProt:P32156 | ||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Kohara Phage |
|||
|
Kohara Phage |
|||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed