rnr:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4175, b4179, JW5741, vacB, yjeC''<ref name='LIB:Riley_2006'/>
''ECK4175, b4179, JW5741, vacB, yjeC''<ref name='LIB:Riley_2006'/>, yjeC''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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exoribonuclease R, RNase R<ref name='LIB:Riley_2006'/>, B4179<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VacB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''exoribonuclease R, RNase R<ref name='LIB:Riley_2006'/>, B4179<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VacB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4175, JW5741, vacB, yjeC, b4179''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=rnr&s=search PortEco search(rnr)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=rnr&loc=MG1655:4404677..4407118,W3110:4411334..4413775,REL606:4384809..4387250,DH10B:4505039..4507480,BW2952:4343412..4345853 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4343412&end=4345853&gene=rnr&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rnr+AND+escherichia+coli Pubmed(rnr)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rnr Textpresso(rnr)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rnr&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11259]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001234&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rnr&loc=MG1655%3A4404677..4407118,W3110%3A4411334..4413775,REL606%3A4384809..4387250,DH10B%3A4505039..4507480,BW2952%3A4343412..4345853]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4343412&end=4345853&gene=rnr&aa=mtkifirddnggtemsqdpfqereaekyanpipsrefilehltkrekpasrdelavelhiegeeqleglrrrlramerdgqlvftrrqcyalperldlvkgtvighrdgygflrvegrkddlylsseqmktcihgdqvlaqplgadrkgrrearivrvlvpktsqivgryfteagvgfvvpddsrlsfdilippdqimgarmgfvvvveltqrptrrtkavgkivevlgdnmgtgmavdialrtheipyiwpqaveqqvaglkeevpeeakagrvdlrdlplvtidgedardfddavycekkrgggwrlwvaiadvsyyvrpstpldrearnrgtsvyfpsqvipmlpevlsnglcslnpqvdrlcmvcemtvsskgrltgykfyeavmssharltytkvwhilqgdqdlreqyaplvkhleelhnlykvldkareerggisfeseeakfifnaerrierieqtqrndahklieecmilanisaarfvekakepalfrihdkpsteaitsfrsvlaelglelpggnkpeprdyaellesvadrpdaemlqtmllrsmkqaiydpenrghfglalqsyahftspirrypdltlhraikyllakeqghqgnttetggyhysmeemlqlgqhcsmaerradeatrdvadwlkcdfmldqvgnvfkgvissvtgfgffvrlddlfidglvhvssldndyyrfdqvgqrlmgessgqtyrlgdrvevrveavnmderkidfslisseraprnvgktarekakkgdagkkggkrrqvgkkvnfepdsafrgekktkpkaakkdarkakkpsaktqkiaaatkakraakkkvae]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rnr+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rnr]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rnr

Gene Synonym(s)

ECK4175, b4179, JW5741, vacB, yjeC[1], yjeC

Product Desc.

EG11259- Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)[2]

Product Synonyms(s)

exoribonuclease R, RNase R[1], B4179[3][1], YjeC[3][1], Rnr[3][1], VacB[3][1] , ECK4175, JW5741, vacB, yjeC, b4179

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nsrR-rnr-rlmB[3]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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rnr is transiently induced after a cold shock. rnr is orthologous with Shigella virulence gene vacB.[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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