ghrA:Gene Product(s): Difference between revisions

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touch the Product_motif_table table.
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0016491
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oxidoreductase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0560
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016616
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oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR006140
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0048037
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cofactor binding
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR006140
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0003824
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catalytic activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR016040
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0005488
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binding
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR016040
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0005886
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plasma membrane
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GO_REF:0000020
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01666
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0008152
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metabolic process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR016040
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016618
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hydroxypyruvate reductase activity
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GO_REF:0000020<br />GO_REF:0000003
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01666<br />EC:1.1.1.81
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0030267
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glyoxylate reductase (NADP) activity
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GO_REF:0000020<br />GO_REF:0000003
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01666<br />EC:1.1.1.79
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0055114
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oxidation reduction
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0560
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete


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Revision as of 21:11, 10 June 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcdW

Synonyms

2-ketoacid reductase[1], B1033[2][1], GhrA[2][1], YcdW[2][1]

Product description

G6539[2][3]

Glyoxylate/hydroxypyruvate reductase; activity higher on glyoxylate than hydroxypyruvate[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRINFAQRFS GVSMDIIFYH PTFDTQWWIE ALRKAIPQAR VRAWKSGDND SADYALVWHP
PVEMLAGRDL KAVFALGAGV DSILSKLQAH PEMLNPSVPL FRLEDTGMGE QMQEYAVSQV
LHWFRRFDDY RIQQNSSHWQ PLPEYHREDF TIGILGAGVL GSKVAQSLQT WRFPLRCWSR
TRKSWPGVQS FAGREELSAF LSQCRVLINL LPNTPETVGI INQQLLEKLP DGAYLLNLAR
GVHVVEDDLL AALDSGKVKG AMLDVFNREP LPPESPLWQH PRVTITPHVA AITRPAEAVE
YISRTIAQLE KGERVCGQVD RARGY
Length

325

Mol. Wt

36.837 kDa

pI

7.3 (calculated)

Extinction coefficient

66,920 - 67,295 (calc based on 8 Y, 10 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ghrA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6539-MONOMER

UniProt (EcoliWiki Page)

UniProt:P75913

PFAM (EcoliWiki Page)

PFAM:PF02826

RefSeq (EcoliWiki Page)

RefSeq:NP_415551


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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