topA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''topA''  
''topA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1268, b1274, JW1266, supX, asuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK1268, b1274, JW1266, supX, asuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DNA topoisomerase I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
DNA topoisomerase I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Topoisomerase I<ref name='LIB:EcoGene'/>
Topoisomerase I<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA topoisomerase I, omega subunit<ref name='LIB:Riley_2006'/>, B1274<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SupX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Topo I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA topoisomerase I (&omega; protein)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA topoisomerase I, omega subunit<ref name='LIB:Riley_2006'/>, B1274<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SupX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Topo I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA topoisomerase I (&omega; protein)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
'''Biological Process'''
* GO:0006265 DNA topological change ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:topA|topA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:topA|topA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=topA&loc=MG1655:1329072..1331669,W3110:1332762..1335359,DH10B:1418468..1421065,REL606:1329420..1332017 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1329420&end=1332017&gene=topA&aa=mgkalvivespakaktinkylgsdyvvkssvghirdlptsgsaakksadststktakkpkkdergalvnrmgvdpwhnweahyevlpgkekvvselkqlaekadhiylatdldregeaiawhlreviggddarysrvvfneitknairqafnkpgelnidrvnaqqarrfmdrvvgymvspllwkkiarglsagrvqsvavrlvverereikafvpeefwevdastttpsgealalqvthqndkpfrpvnkeqtqaavsllekarysvleredkpttskpgapfitstlqqaastrlgfgvkktmmmaqrlyeagyitymrtdstnlsqdavnmvrgyisdnfgkkylpespnqyaskensqeaheairpsdvnvmaeslkdmeadaqklyqliwrqfvacqmtpakydsttltvgagdfrlkargrilrfdgwtkvmpalrkgdedrilpavnkgdaltlveltpaqhftkpparfseaslvkelekrgigrpstyasiistiqdrgyvrvenrrfyaekmgeivtdrleenfrelmnydftaqmensldqvanheaewkavldhffsdftqqldkaekdpeeggmrpnqmvltsidcptcgrkmgirtastgvflgcsgyalppkerckttinlvpenevlnvlegedaetnalrakrrcpkcgtamdsylidpkrklhvcgnnptcdgyeieegefrikgydgpivecekcgsemhlkmgrfgkymactneeckntrkilrngevappkedpvplpelpceksdayfvlrdgaagvflaantfpksretraplveelyrfrdrlpeklryladapqqdpegnktmvrfsrktkqqyvssekdgkatgwsafyvdgkwvegkk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=topA+AND+escherichia+coli Pubmed(topA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=topA Textpresso(topA)]


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Revision as of 00:28, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

topA

Gene Synonym(s)

ECK1268, b1274, JW1266, supX, asuA?[1][2]

Product Desc.

DNA topoisomerase I[2][3]

Topoisomerase I[4]

Product Synonyms(s)

DNA topoisomerase I, omega subunit[1], B1274[2][1], SupX[2][1], TopA[2][1], Topo I[2][1], DNA topoisomerase I (ω protein)[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): topA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(topA)    Textpresso(topA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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