tdcB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''tdcB''  
''tdcB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3106, b3117, JW3088, tdc''<ref name='LIB:Riley_2006'/>
''ECK3106, b3117, JW3088, tdc''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Threonine dehydratase<ref name='LIB:EcoGene'/>
Threonine dehydratase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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catabolic threonine dehydratase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3117<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
catabolic threonine dehydratase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3117<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0003941 L-serine ammonia-lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004793 threonine aldolase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016597 amino acid binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0030170 pyridoxal phosphate binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006565 L-serine catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019518 threonine catabolic process to pyruvate ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006567 threonine catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IC])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:tdcABCDEFG|tdcABCDEFG]]<ref name='LIB:EcoCyc10.6'/>, OP00167, tdcABC  
transcription unit(s): [[:Category:Txn_unit:tdcABCDEFG|tdcABCDEFG]]<ref name='LIB:EcoCyc10.6'/>, OP00167, tdcABC  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=tdcB&loc=MG1655:3264050..3263061,W3110:3265883..3264894,DH10B:3361795..3360806,REL606:3199062..3198073 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3199062&end=3198073&gene=tdcB&aa=mhitydlpvaiddiieakqrlagriyktgmprsnyfserckgeiflkfenmqrtgsfkirgafnklssltdaekrkgvvacsagnhaqgvslscamlgidgkvvmpkgapkskvaatcdysaevvlhgdnfndtiakvseivemegrifippyddpkviagqgtigleimedlydvdnvivpiggggliagiavaiksinptirvigvqsenvhgmaasfhsgeitthrttgtladgcdvsrpgnltyeivrelvddivlvsedeirnsmialiqrnkvvtegagalacaallsgkldqyiqnrktvsiisggnidlsrvsqitgfvda Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tdcB+AND+escherichia+coli Pubmed(tdcB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tdcB Textpresso(tdcB)]


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Revision as of 23:29, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

tdcB

Gene Synonym(s)

ECK3106, b3117, JW3088, tdc[1]

Product Desc.

TdcB[2][3];

Component of threonine dehydratase (catabolic)[2][3]

Threonine dehydratase[4]

Product Synonyms(s)

catabolic threonine dehydratase, PLP-dependent[1], B3117[2][1], Tdc[2][1], TdcB[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tdcABCDEFG[2], OP00167, tdcABC

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(tdcB)    Textpresso(tdcB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The structure of Salmonella typhimurium TcdB has been determined (Simanshu, 2006). otherPDB: 1GN0, 1GN1, 1GN2.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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