sdhB:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''sdhB'' | ''sdhB'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK0713, b0724, JW0714, dhsB''<ref name='LIB:Riley_2006'/> | ''ECK0713, b0724, JW0714, dhsB''<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
succinate dehydrogenase iron-sulfur protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | succinate dehydrogenase iron-sulfur protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
| Line 43: | Line 43: | ||
Succinate dehydrogenase (SQR) iron-sulfur protein; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/> | Succinate dehydrogenase (SQR) iron-sulfur protein; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
succinate dehydrogenase, FeS subunit<ref name='LIB:Riley_2006'/>, B0724<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | succinate dehydrogenase, FeS subunit<ref name='LIB:Riley_2006'/>, B0724<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
'''Biological Process''' | |||
* GO:0009060 aerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IEP]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB | transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=sdhB&loc=MG1655:756912..757628,W3110:758111..758827,DH10B:809504..810220,REL606:738480..739196 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=738480&end=739196&gene=sdhB&aa=mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvcgsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpyllnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayrflidsrdtetdsrldglsdafsvfrchsimncvsvcpkglnptraighiksmllqrna Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sdhB+AND+escherichia+coli Pubmed(sdhB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=sdhB Textpresso(sdhB)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 23:32, 21 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
sdhB |
|---|---|
| Gene Synonym(s) |
ECK0713, b0724, JW0714, dhsB[1] |
| Product Desc. |
succinate dehydrogenase iron-sulfur protein[2][3]; Component of catalytic subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3] Succinate dehydrogenase (SQR) iron-sulfur protein; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4] |
| Product Synonyms(s) |
succinate dehydrogenase, FeS subunit[1], B0724[2][1], DhsB[2][1], SdhB[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): sdhDAB[2], sdhCDAB-sucABCD[2], OP00142, sdhCDAB |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.