rnr:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''rnr'' | ''rnr'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4175, b4179, JW5741, vacB, yjeC''<ref name='LIB:Riley_2006'/> | ''ECK4175, b4179, JW5741, vacB, yjeC''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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EG11259- | EG11259- | ||
Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)<ref name='LIB:EcoGene'/> | Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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exoribonuclease R, RNase R product<ref name='LIB:Riley_2006'/>, B4179 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnr product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VacB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | exoribonuclease R, RNase R product<ref name='LIB:Riley_2006'/>, B4179 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnr product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VacB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:nsrR-rnr-rlmB|nsrR-rnr-rlmB]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:nsrR-rnr-rlmB|nsrR-rnr-rlmB]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=rnr&loc=MG1655:4404677..4407118,W3110:4411334..4413775,REL606:4384809..4387250,DH10B:4505039..4507480 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4505039&end=4507480&gene=rnr&aa=mtkifirddnggtemsqdpfqereaekyanpipsrefilehltkrekpasrdelavelhiegeeqleglrrrlramerdgqlvftrrqcyalperldlvkgtvighrdgygflrvegrkddlylsseqmktcihgdqvlaqplgadrkgrrearivrvlvpktsqivgryfteagvgfvvpddsrlsfdilippdqimgarmgfvvvveltqrptrrtkavgkivevlgdnmgtgmavdialrtheipyiwpqaveqqvaglkeevpeeakagrvdlrdlplvtidgedardfddavycekkrgggwrlwvaiadvsyyvrpstpldrearnrgtsvyfpsqvipmlpevlsnglcslnpqvdrlcmvcemtvsskgrltgykfyeavmssharltytkvwhilqgdqdlreqyaplvkhleelhnlykvldkareerggisfeseeakfifnaerrierieqtqrndahklieecmilanisaarfvekakepalfrihdkpsteaitsfrsvlaelglelpggnkpeprdyaellesvadrpdaemlqtmllrsmkqaiydpenrghfglalqsyahftspirrypdltlhraikyllakeqghqgnttetggyhysmeemlqlgqhcsmaerradeatrdvadwlkcdfmldqvgnvfkgvissvtgfgffvrlddlfidglvhvssldndyyrfdqvgqrlmgessgqtyrlgdrvevrveavnmderkidfslisseraprnvgktarekakkgdagkkggkrrqvgkkvnfepdsafrgekktkpkaakkdarkakkpsaktqkiaaatkakraakkkvae Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rnr+AND+escherichia+coli Pubmed(rnr)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rnr Textpresso(rnr)] | |||
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Revision as of 23:10, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
rnr |
|---|---|
| Gene Synonym(s) |
ECK4175, b4179, JW5741, vacB, yjeC[1] |
| Product Desc. |
EG11259- Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)[2] |
| Product Synonyms(s) |
exoribonuclease R, RNase R product[1], B4179 product[3][1], YjeC product[3][1], Rnr product[3][1], VacB product[3][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): nsrR-rnr-rlmB[3] |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
rnr is transiently induced after a cold shock. rnr is orthologous with Shigella virulence gene vacB.[2]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7