tufB:Quickview: Difference between revisions

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{{Tab On|Quickview|tufB}}{{Tab|Gene|tufB}}{{Tab|Gene Product(s)|tufB}}{{Tab|Expression|tufB}}{{Tab|Evolution|tufB}}{{Tab|On One Page|tufB}}{{TabsBottom}}
{{Tab On|Quickview|tufB}}{{Tab|Gene|tufB}}{{Tab|Gene Product(s)|tufB}}{{Tab|Expression|tufB}}{{Tab|Evolution|tufB}}{{Tab|On One Page|tufB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[tufB:Gene|''tufB]]'' (synonyms: ''ECK3971, b3980, JW3943, kirT, pulT'')<ref name='LIB:Riley_2006'/>
''tufB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[tufB:Gene_Product(s)|protein chain elongation factor EF-Tu, TufB protein chain elongation factor EF-Tu]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: B3980 product, PulT product, KirT product, TufB product, EF-Tu product
''ECK3971, b3980, JW3943, kirT, pulT''<ref name='LIB:Riley_2006'/>, pulT''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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elongation factor Tu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
elongation factor Tu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


EF-Tu, Elongation Factor-Translation, unstable; GTP-dependent binding of aa-tRNA to the A-site of ribosomes; has intrinsic GTPase activity when bound to kirromycin<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''B3980<ref name='LIB:EcoCyc10.6'/>, PulT<ref name='LIB:EcoCyc10.6'/>, KirT<ref name='LIB:EcoCyc10.6'/>, TufB<ref name='LIB:EcoCyc10.6'/>, EF-Tu<ref name='LIB:EcoCyc10.6'/> , ECK3971, JW3943, kirT, pulT, b3980''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:tufB|tufB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:thrU-tyrU-glyT-thrT|thrU-tyrU-glyT-thrT]]<ref name='LIB:EcoCyc10.6'/>, thrU  
transcription unit(s): [[:Category:Txn_unit:tufB|tufB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:thrU-tyrU-glyT-thrT|thrU-tyrU-glyT-thrT]]<ref name='LIB:EcoCyc10.6'/>, thrU  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tufB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11037]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001026&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tufB&loc=MG1655%3A4173967..4175151,W3110%3A3460737..3459553,REL606%3A4155555..4156739,DH10B%3A4273663..4274847,BW2952%3A4063647..4064831]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4063647&end=4064831&gene=tufB&aa=mskekfertkphvnvgtighvdhgkttltaaittvlaktyggaarafdqidnapeekargitintshveydtptrhyahvdcpghadyvknmitgaaqmdgailvvaatdgpmpqtrehillgrqvgvpyiivflnkcdmvddeellelvemevrellsqydfpgddtpivrgsalkalegdaeweakilelagfldsyipeperaidkpfllpiedvfsisgrgtvvtgrvergiikvgeeveivgiketqkstctgvemfrklldegragenvgvllrgikreeiergqvlakpgtikphtkfesevyilskdeggrhtpffkgyrpqfyfrttdvtgtielpegvemvmpgdnikmvvtlihpiamddglrfaireggrtvgagvvakvls]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tufB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tufB]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
mgiglio@SOM.UMARYLAND.EDU
 
tufB encodes an essential function, with duplicate gene tufA, such that tufA or tufB can be deleted, but  the double mutant is inviable.<ref name='LIB:EcoGene'/>




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==References==
==References==
{{BacktoTop}}
<references/>
<references/>
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

tufB

Gene Synonym(s)

ECK3971, b3980, JW3943, kirT, pulT[1], pulT

Product Desc.

elongation factor Tu[2][3]

EF-Tu, Elongation Factor-Translation, unstable; GTP-dependent binding of aa-tRNA to the A-site of ribosomes; has intrinsic GTPase activity when bound to kirromycin[4]

Product Synonyms(s)

B3980[2], PulT[2], KirT[2], TufB[2], EF-Tu[2] , ECK3971, JW3943, kirT, pulT, b3980

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tufB[2], thrU-tyrU-glyT-thrT[2], thrU

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


mgiglio@SOM.UMARYLAND.EDU

tufB encodes an essential function, with duplicate gene tufA, such that tufA or tufB can be deleted, but the double mutant is inviable.[4]



References

[back to top]


  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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