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{{Tab On|Quickview|rpoD}}{{Tab|Gene|rpoD}}{{Tab|Gene Product(s)|rpoD}}{{Tab|Expression|rpoD}}{{Tab|Evolution|rpoD}}{{Tab|On One Page|rpoD}}{{TabsBottom}}
{{Tab On|Quickview|rpoD}}{{Tab|Gene|rpoD}}{{Tab|Gene Product(s)|rpoD}}{{Tab|Expression|rpoD}}{{Tab|Evolution|rpoD}}{{Tab|On One Page|rpoD}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rpoD:Gene|''rpoD]]'' (synonyms: ''ECK3057, b3067, JW3039, alt'')<ref name='LIB:Riley_2006'/>
''rpoD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rpoD:Gene_Product(s)|RpoD product]]<ref name='LIB:Riley_2006'/>: RNA polymerase, sigma 70 (sigma D) factor product, B3067 product, Alt product, sigmaD factor product, sigma D factor product, sigma 70 factor product
''ECK3057, b3067, JW3039, alt''<ref name='LIB:Riley_2006'/>, alt''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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sigma70 factor<ref name='LIB:EcoCyc10.6'/> RNA polymerase, sigma 70 (sigma D) factor<ref name='LIB:EcoCyc11.1'/>  
sigma70 factor<ref name='LIB:EcoCyc10.6'/>; RNA polymerase, sigma 70 (sigma D) factor<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:RNA polymerase sigma70|RNA polymerase sigma70]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:RNA polymerase sigma70|RNA polymerase sigma70]]<ref name='LIB:EcoCyc10.6'/>; [[:Category:Complex:RNA polymerase sigma70|RNA polymerase sigma 70]]<ref name='LIB:EcoCyc11.1'/>


RNA polymerase subunit, sigma 70, initiates transcription; housekeeping sigma<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''RNA polymerase, sigma 70 (sigma D) factor<ref name='LIB:Riley_2006'/>, B3067<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Alt<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpoD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, sigmaD factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, sigma D factor<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>, sigma 70 factor<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , alt, ECK3057, JW3039, b3067''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rpoD|rpoD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rpsU-dnaG-rpoD|rpsU-dnaG-rpoD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rpoD|rpoD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rpsU-dnaG-rpoD|rpsU-dnaG-rpoD]]<ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rpoD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10896]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000887&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rpoD&loc=MG1655%3A3211069..3212910,W3110%3A3211703..3213544,REL606%3A3145864..3147705,DH10B%3A3308814..3310655,BW2952%3A3098217..3100058]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3098217&end=3100058&gene=rpoD&aa=meqnpqsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeapdaddlmlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaeedlaptathvgselsqedldddededeedgdddsadddnsidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrklrhpsrsevlrsfldd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rpoD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rpoD]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
 
 




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rpoD

Gene Synonym(s)

ECK3057, b3067, JW3039, alt[1], alt

Product Desc.

sigma70 factor[2]; RNA polymerase, sigma 70 (sigma D) factor[3];

Component of RNA polymerase sigma70[2]; RNA polymerase sigma 70[3]

RNA polymerase subunit, sigma 70, initiates transcription; housekeeping sigma[4]

Product Synonyms(s)

RNA polymerase, sigma 70 (sigma D) factor[1], B3067[2][1], Alt[2][1], RpoD[2][1], sigmaD factor[2][1], sigma D factor[3][1], sigma 70 factor[3][1] , alt, ECK3057, JW3039, b3067

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpoD[2], rpsU-dnaG-rpoD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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