Phage lambda cI:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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''cI, lambdap88''
''cI, lambdap88''


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<!--Nomenclature_notes--></protect>
<!--Nomenclature_notes--></protect>
===Notes===
===Notes===
 
cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.


==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[[BW2952]]
|
|
NC_012759: 4142828..4143541<br /><gbrowseImage>
name=NC_012759:4142828..4143541
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|4142828|4143541|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|4142828|4143541|FASTA Dump}}
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|
NC_001416
NC_001416
|
|
 
|
|
NC_001416: 37940..37227<br />{{GBrowseFigureByCoord|37227|37940|bacteriophage_lambda|NC_001416}}
NC_001416: 37940..37227<br /><gbrowseImage>
name=NC_001416:37227..37940
source=bacteriophage_lambda
preset=GeneLocation
</gbrowseImage>
|
|
{{GBrowseLink|bacteriophage_lambda|NC_001416|37940|37227|Gbrowse (Bacteriophage lambda)}}
{{GBrowseLink|bacteriophage_lambda|NC_001416|37940|37227|Gbrowse (Bacteriophage lambda)}}
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{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|37940|37227|FASTA Dump}}  


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!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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&nbsp;  
&nbsp;  


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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
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===Notes===


==Genetic Resources==
==Genetic Resources==
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===Categories===
===Categories===
[[Category:Gene List:Phage lambda]]
[[Category:Gene List:Phage lambda]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:36, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda cI

Mnemonic
Synonyms

cI, lambdap88

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 4142828..4143541
<gbrowseImage> name=NC_012759:4142828..4143541 source=BW2952 preset=GeneLocation </gbrowseImage>

NC_001416

NC_001416: 37940..37227
<gbrowseImage> name=NC_001416:37227..37940 source=bacteriophage_lambda preset=GeneLocation </gbrowseImage>

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

cIam504

g →c on the + strand at bp 37308

 

 

 

 

 

 

cIam14

c →a on the + strand at bp 37287

 

 

 

 

 

 

cIam505

g →a on the + strand at bp 37313

 

 

 

 

 

 

ind1

c →t on the + strand at bp 37589

 

 

 

 

 

 

cIam499

g →c on the + strand at bp 37629

 

 

 

 

 

 

cIam212

a →c on the + strand at bp 37635

 

 

 

 

 

 

cIam34

c →a on the + strand at bp 37680

 

 

 

 

 

 

strain ci857s7([25])

c →t on the + strand at bp 37742

 

 

 

 

 

 

cIam282

g →a on the + strand at bp 37808

 

 

 

 

 

 

cIam302

a →c on the + strand at bp 37872

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

<protect>

References

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See Help:References for how to manage references in EcoliWiki.


Categories

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