Phage lambda orf-194:Gene Product(s): Difference between revisions

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Adding Interactions table to lambda and plasmid F Gene Product pages.
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|-
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!align=left {{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
||
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orf-194  
orf-194
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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
||
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orf-194, lambdap29  
orf-194, lambdap29
|-
|-
!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
||
||
Putative fiber assembly protein  
Putative fiber assembly protein, tfa <ref name='PMID:1439823'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
 
|
GO:0098024
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virus tail, fiber
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PMID:1439823
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IDA: Inferred from Direct Assay
|
 
|
C
|
 
|
complete


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!|Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Name
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|-
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!align=left {{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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<pre>MAFRMSEQPR TIKIYNLLAG TNEFIGEGDA YIPPHTGLPA NSTDIAPPDI PAGFVAVFNS
<pre>MAFRMSEQPR TIKIYNLLAG TNEFIGEGDA YIPPHTGLPA NSTDIAPPDI PAGFVAVFNS
DEASWHLVED HRGKTVYDVA SGDALFISEL GPLPENFTWL SPGGEYQKWN GTAWVKDTEA
DEASWHLVED HRGKTVYDVA SGDALFISEL GPLPENFTWL SPGGEYQKWN GTAWVKDTEA
EKLFRIREAE ETKKSLMQVA SEHIAPLQDA ADLEIATKEE TSLLEAWKKY RVLLNRVDTS
EKLFRIREAE ETKKSLMQVA SEHIAPLQDA ADLEIATKEE TSLLEAWKKY RVLLNRVDTS
TAPDIEWPAV PVME</pre>  
TAPDIEWPAV PVME</pre>
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!align=left {{table heading style}} |Length
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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40,450 (calc based on 5 Y, 6 W, and C residues)
40,450 (calc based on 5 Y, 6 W, and 0 C residues)


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!align=left {{table heading style}} |Structures
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<beststructure>
gene=Phage_lambda_orf-194
taxon=10710
</beststructure>
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!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
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View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040605.1 Genbank:NP_040605.1]
|


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Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

orf-194

Synonyms

orf-194, lambdap29

Product description

Putative fiber assembly protein, tfa [1]

EC number (for enzymes)


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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098024

virus tail, fiber

PMID:1439823[1]

IDA: Inferred from Direct Assay

C

complete

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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAFRMSEQPR TIKIYNLLAG TNEFIGEGDA YIPPHTGLPA NSTDIAPPDI PAGFVAVFNS
DEASWHLVED HRGKTVYDVA SGDALFISEL GPLPENFTWL SPGGEYQKWN GTAWVKDTEA
EKLFRIREAE ETKKSLMQVA SEHIAPLQDA ADLEIATKEE TSLLEAWKKY RVLLNRVDTS
TAPDIEWPAV PVME
Length

194

Mol. Wt

21.602 kDa

pI

4.5 (calculated)

Extinction coefficient

40,450 (calc based on 5 Y, 6 W, and 0 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_orf-194 taxon=10710 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 Hendrix, RW & Duda, RL (1992) Bacteriophage lambda PaPa: not the mother of all lambda phages. Science 258 1145-8 PubMed

Categories

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