mdfA:Gene Product(s): Difference between revisions
Add jmol applet area. |
touch |
||
| (28 intermediate revisions by 3 users not shown) | |||
| Line 10: | Line 10: | ||
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css> | -->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css> | ||
<noinclude>{{TabsTop}} | <noinclude>{{TabsTop}} | ||
{{Tab|Quickview| | {{Tab|Quickview|mdfA}}{{Tab|Gene|mdfA}}{{Tab On|Gene Product(s)|mdfA}}{{Tab|Expression|mdfA}}{{Tab|Evolution|mdfA}}{{Tab|On One Page|mdfA}}{{TabsBottom}} | ||
{| | {| | ||
|- | |- | ||
| Line 35: | Line 35: | ||
* | * | ||
****************************************************************************************** -->{{Product_nomenclature_help}} | ****************************************************************************************** -->{{Product_nomenclature_help}} | ||
{| | {| id="L46aa46bb4cfbb" class=" tableEdit Product_nomenclature_table" | ||
|- | |- | ||
!align=left {{table heading style}} |Standard name | !align=left {{table heading style}} |Standard name | ||
|| | || | ||
MdfA | |||
|- | |- | ||
!align=left {{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
|| | || | ||
multidrug efflux system protein<ref name='LIB:Riley_2006'/>, B0842<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmlA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, | ''multidrug efflux system protein<ref name='LIB:Riley_2006'/>, B0842<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmlA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MdfA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cmr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cmlA, cmr, ECK0832, JW0826, b0842'' | ||
|- | |- | ||
!align=left {{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
|| | || | ||
MdfA/ | MdfA/MdfA MFS multidrug transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Transmembrane multidrug/chloramphenicol efflux transporter; confers alkaline pH tolerence<ref name='LIB:EcoGene'/> | Transmembrane multidrug/chloramphenicol efflux transporter; confers alkaline pH tolerence<ref name='LIB:EcoGene'/> | ||
| Line 56: | Line 56: | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.L46aa46bb4cfbb&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.L46aa46bb4cfbb&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.L46aa46bb4cfbb--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.L46aa46bb4cfbb--> | ||
| Line 75: | Line 75: | ||
* | * | ||
****************************************************************************************** -->{{Product_GO_help}} | ****************************************************************************************** -->{{Product_GO_help}} | ||
{| | {| id="C46aa46bc4c8b6" class=" tableEdit GO_table_product dataTable" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
|- | |- | ||
| | | | ||
| Line 86: | Line 86: | ||
transporter activity | transporter activity | ||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR005829 | InterPro:IPR005829 | ||
| | | | ||
F | F | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 101: | Line 101: | ||
| | | | ||
GO: | GO:0005886 | ||
| | | | ||
plasma membrane | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-0997 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 120: | Line 120: | ||
| | | | ||
GO: | GO:0005886 | ||
| | | | ||
membrane | plasma membrane | ||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-1003 | |||
| | | | ||
C | C | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 139: | Line 139: | ||
| | | | ||
GO: | GO:0006810 | ||
| | | | ||
transport | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro: | InterPro:IPR005829 | ||
| | | | ||
P | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0006810 | ||
| | | | ||
transport | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
SP_KW:KW-0813 | |||
| | | | ||
P | P | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0016020 | ||
| | | | ||
membrane | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR005829 | |||
| | | | ||
C | C | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 196: | Line 196: | ||
| | | | ||
GO: | GO:0016020 | ||
| | | | ||
membrane | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-0472 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 215: | Line 215: | ||
| | | | ||
GO: | GO:0016021 | ||
| | | | ||
integral to membrane | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW- | SP_KW:KW-0812 | ||
| | | | ||
C | C | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 234: | Line 234: | ||
| | | | ||
GO: | GO:0016021 | ||
| | | | ||
integral to membrane | |||
| | | | ||
GO_REF: | GO_REF:0000023 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_SL:SL-9909 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 253: | Line 253: | ||
| | | | ||
GO: | GO:0055085 | ||
| | | | ||
transmembrane transport | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR005829 | InterPro:IPR005829 | ||
| | | | ||
P | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
| Line 272: | Line 272: | ||
| | | | ||
GO: | GO:0055085 | ||
| | | | ||
transmembrane transport | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro: | InterPro:IPR011701 | ||
| | | | ||
P | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.C46aa46bc4c8b6&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.C46aa46bc4c8b6&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.C46aa46bc4c8b6--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.C46aa46bc4c8b6--> | ||
| Line 320: | Line 301: | ||
* | * | ||
****************************************************************************************** -->{{Product_interactions_help}} | ****************************************************************************************** -->{{Product_interactions_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46aa46c2ae088" class=" tableEdit Product_interactions_table dataTable" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Partner Type!!Partner!!Notes!!References!!Evidence | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.M46aa46c2ae088&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.M46aa46c2ae088&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.M46aa46c2ae088--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.M46aa46c2ae088--> | ||
| Line 341: | Line 322: | ||
* | * | ||
****************************************************************************************** -->{{Product_localization_help}} | ****************************************************************************************** -->{{Product_localization_help}} | ||
{| | {| id="I46aa46c3611c7" class=" tableEdit Product_localization_table" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Compartment!!Description!!Evidence!!Notes | !|Compartment!!Description!!Evidence!!Reference/Source!!Notes | ||
|- | |- | ||
| | | | ||
| Line 351: | Line 332: | ||
| | | | ||
Daley et al. (2005) <ref name=PMID:15919996/> | Daley et al. (2005) <ref name=PMID:15919996/> | ||
| | |||
| | | | ||
| Line 361: | Line 344: | ||
| | | | ||
| | |||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.I46aa46c3611c7&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.I46aa46c3611c7&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.I46aa46c3611c7--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.I46aa46c3611c7--> | ||
| Line 384: | Line 369: | ||
* | * | ||
****************************************************************************************** -->{{Product_physical_properties_help}} | ****************************************************************************************** -->{{Product_physical_properties_help}} | ||
{| | {| id="X46aa46c4cb2f9" class=" tableEdit Product_phys_prop_table" | ||
|- | |||
!align=left {{table heading style}} |Name | |||
|| | |||
|- | |- | ||
| Line 414: | Line 403: | ||
69,900 - 70,400 (calc based on 10 Y, 10 W, and 4 C residues) | 69,900 - 70,400 (calc based on 10 Y, 10 W, and 4 C residues) | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.X46aa46c4cb2f9&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.X46aa46c4cb2f9&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.X46aa46c4cb2f9--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.X46aa46c4cb2f9--> | ||
| Line 432: | Line 421: | ||
* | * | ||
****************************************************************************************** -->{{Product_domains_motifs_help}} | ****************************************************************************************** -->{{Product_domains_motifs_help}} | ||
{| | {| id="E46aa46c5322f6" class=" tableEdit Product_motif_table dataTable" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes!!References | ||
|- | |- | ||
| | | | ||
Domain | Domain | ||
| | | | ||
22..365 | |||
| | | | ||
[http://pfam.janelia.org/family/PF07690 PF07690 Major Facilitator Superfamily] | |||
| | | | ||
| | | | ||
PMID:19920124 | |||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.E46aa46c5322f6&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.E46aa46c5322f6&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.E46aa46c5322f6--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.E46aa46c5322f6--> | ||
| Line 568: | Line 460: | ||
* | * | ||
****************************************************************************************** -->{{Product_structure_help}} | ****************************************************************************************** -->{{Product_structure_help}} | ||
{| | {| id="J46a7d884ea9b8" class=" tableEdit Product_structure_table" | ||
|- | |- | ||
!align=left {{table heading style}} |Structures | !align=left {{table heading style}} |Structures | ||
|| | || | ||
<beststructure>cmr | <beststructure> | ||
562</beststructure> | gene=cmr | ||
taxon=562,83333 | |||
</beststructure> | |||
|- | |- | ||
!align=left {{table heading style}} |Models | !align=left {{table heading style}} |Models | ||
|| | || | ||
View models at: | View models at: | ||
* [http:// | * [http://www.proteinmodelportal.org/query/uniprot/P0AEY8 Protein Model Portal] | ||
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AEY8 PSI-PRED (P0AEY8)] | |||
* [http://bioinf.cs.ucl.ac.uk/ | * [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AEY8 Genomes TO Protein (P0AEY8)] (GTOP) | ||
* [http://spock.genes.nig.ac.jp/~genome/ | |||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.J46a7d884ea9b8&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.J46a7d884ea9b8&page=21494&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.J46a7d884ea9b8--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.J46a7d884ea9b8--> | ||
| Line 626: | Line 516: | ||
* | * | ||
****************************************************************************************** -->{{Product_resources_help}} | ****************************************************************************************** -->{{Product_resources_help}} | ||
{| | {| id="F46aa46c5ca60b" class=" tableEdit Product_resource_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Resource type!!Source!!Notes/Reference | !|Resource type!!Source!!Notes/Reference | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.F46aa46c5ca60b&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.F46aa46c5ca60b&page=21494&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.F46aa46c5ca60b--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.F46aa46c5ca60b--> | ||
| Line 648: | Line 538: | ||
* | * | ||
****************************************************************************************** -->{{Gene_accessions_help}} | ****************************************************************************************** -->{{Gene_accessions_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O46aa46c6227db" class=" tableEdit Gene_accessions_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |- | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/protein/16128810 GI:16128810] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_415363.1 GeneID:945448] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | [http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | ||
| | | | ||
[ | [http://www.uniprot.org/uniprot/P0AEY8 UniProtKB/Swiss-Prot:P0AEY8] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene?term=945448 GeneID:945448] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[[RegulonDB]] | |||
| | | | ||
RegulonDB: | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |- | ||
| | | | ||
[[EchoBASE]] | |||
| | | | ||
EchoBASE: | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.O46aa46c6227db&page=21494&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.O46aa46c6227db&page=21494&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.O46aa46c6227db--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.O46aa46c6227db--> | ||
| Line 705: | Line 602: | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| | {| id="T46a7d8885eb33" class=" tableEdit Links_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Name!!URL!!Comments | !|Name!!URL!!Comments | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.T46a7d8885eb33&page=21494&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21494.T46a7d8885eb33&page=21494&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.21494.T46a7d8885eb33--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.21494.T46a7d8885eb33--> | ||
| Line 726: | Line 623: | ||
{{BacktoTop}} | {{BacktoTop}} | ||
[[Category:Proteins]] | [[Category:Proteins]] | ||
Latest revision as of 16:28, 5 October 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
MdfA |
|---|---|
| Synonyms |
multidrug efflux system protein[1], B0842[2][1], CmlA[2][1], MdfA[2][1], Cmr[2][1] , cmlA, cmr, ECK0832, JW0826, b0842 |
| Product description |
MdfA/MdfA MFS multidrug transporter[2][3] Transmembrane multidrug/chloramphenicol efflux transporter; confers alkaline pH tolerence[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005215 |
transporter activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9909 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0055085 |
transmembrane transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0055085 |
transmembrane transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 12 predicted transmembrane domains |
Daley et al. (2005) [5] |
||
|
membrane |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MQNKLASGAR LGRQALLFPL CLVLYEFSTY IGNDMIQPGM LAVVEQYQAG IDWVPTSMTA YLAGGMFLQW LLGPLSDRIG RRPVMLAGVV WFIVTCLAIL LAQNIEQFTL LRFLQGISLC FIGAVGYAAI QESFEEAVCI KITALMANVA LIAPLLGPLV GAAWIHVLPW EGMFVLFAAL AAISFFGLQR AMPETATRIG EKLSLKELGR DYKLVLKNGR FVAGALALGF VSLPLLAWIA QSPIIIITGE QLSSYEYGLL QVPIFGALIA GNLLLARLTS RRTVRSLIIM GGWPIMIGLL VAAAATVISS HAYLWMTAGL SIYAFGIGLA NAGLVRLTLF ASDMSKGTVS AAMGMLQMLI FTVGIEISKH AWLNGGNGLF NLFNLVNGIL WLSLMVIFLK DKQMGNSHEG |
| Length |
410 |
| Mol. Wt |
44.323 kDa |
| pI |
9.1 (calculated) |
| Extinction coefficient |
69,900 - 70,400 (calc based on 10 Y, 10 W, and 4 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories
