galE:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01370 PFAM:PF01370]
[http://pfam.janelia.org/family/PF01370 PF01370 NAD dependent epimerase/dehydratase family]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10366:SF39 PTHR10366:SF39]
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[[EcoCyc]]
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EcoCyc:EG10362
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10362
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000355
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0357
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0002575
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016575 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000005081 (score: 0.129)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017745 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G10960 (score: 1.000; bootstrap: 99%)
  • AT4G23920 (score: 0.754)
  • AT1G64440 (score: 0.611)
  • AT1G12780 (score: 0.325)
  • AT1G63180 (score: 0.310)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006586 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029822 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008132 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019408 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014637 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231575 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035147 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11351-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006431 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000313026 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025680 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016112 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1921496 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ZDJ7 (score: 1.000; bootstrap: 99%)
  • Q8H931 (score: 0.987)
  • Q6K2E1 (score: 0.552)
  • Q58IJ5 (score: 0.522)
  • Q8LNZ3 (score: 0.403)
  • Q7XZQ2 (score: 0.403)
  • Q58IJ6 (score: 0.392)
  • Q652A8 (score: 0.176)
  • Q58IJ7 (score: 0.171)
  • Q8H0B7 (score: 0.167)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000588 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013322 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR019C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3654c (score: 1.000; bootstrap: 100%)
  • SPBPB2B22c (score: 0.132)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000136988 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031357001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002548 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GALE

From SHIGELLACYC

E. coli O157

GALE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01370 NAD dependent epimerase/dehydratase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR10366:SF39

EcoCyc

EcoCyc:EG10362

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10362

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000355

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0357

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002575

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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