arnT:Gene Product(s): Difference between revisions

Standard name	ArnT
Synonyms	4-amino-4-deoxy-L-arabinose transferase^[1], B2257^[2]^[1], YfbI^[2]^[1], ArnT^[2]^[1], PmrK^[2]^[1], Orf5^[2]^[1] , ECK2250, JW2251, pbgE1, pmrK, pqaB, yfbI, b2257
Product description	4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase^[2]^[3] 4-amino-4-deoxy-L-arabinose(Ara4N):Lipid A transferase; modifies lipid A phosphates with aminoarabinose and confers resistance to polymyxin B and cationic antimicrobial peptides; glycolipid donor is undecaprenyl phosphate-alpha-L-Ara4N^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000030	mannosyltransferase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003342	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01165	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006493	protein amino acid O-linked glycosylation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003342	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009103	lipopolysaccharide biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0448	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01165	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0441	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003342	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016763	transferase activity, transferring pentosyl groups	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.4.2	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MKSVRYLIGL FAFIACYYLL PISTRLLWQP DETRYAEISR EMLASGDWIV PHLLGLRYFE KPIAGYWINS IGQWLFGANN FGVRAGVIFA TLLTAALVTW FTLRLWRDKR LALLATVIYL SLFIVYAIGT YAVLDPFIAF WLVAGMCSFW LAMQAQTWKG KSAGFLLLGI TCGMGVMTKG FLALAVPVLS VLPWVATQKR WKDLFIYGWL AVISCVLTVL PWGLAIAQRE PNFWHYFFWV EHIQRFALDD AQHRAPFWYY VPVIIAGSLP WLGLLPGALY TGWKNRKHSA TVYLLSWTIM PLLFFSVAKG KLPTYILSCF ASLAMLMAHY ALLAAKNNPL ALRINGWINI AFGVTGIIAT FVVSPWGPMN TPVWQTFESY KVFCAWSIFS LWAFFGWYTL TNVEKTWPFA ALCPLGLALL VGFSIPDRVM EGKHPQFFVE MTQESLQPSR YILTDSVGVA AGLAWSLQRD DIIMYRQTGE LKYGLNYPDA KGRFVSGDEF ANWLNQHRQE GIITLVLSVD RDEDINSLAI PPADAIDRQE RLVLIQYRPK
Length	550
Mol. Wt	62.544 kDa
pI	9.3 (calculated)
Extinction coefficient	189,760 - 190,635 (calc based on 24 Y, 28 W, and 7 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	3..237	PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase		PMID:19920124^[5]
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<motif_map/>

Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=arnT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130192	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947297	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007464	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P76473	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G7170	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG14093	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947297	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003746	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3846	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

arnT:Gene Product(s): Difference between revisions

Latest revision as of 20:49, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="P46aa9c3beb839"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
--amino-4-deoxy-L-arabinose transferase<ref name='LIB:Riley_2006'/>, B2257<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Orf5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''4-amino-4-deoxy-L-arabinose transferase<ref name='LIB:Riley_2006'/>, B2257<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Orf5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2250, JW2251, pbgE1, pmrK, pqaB, yfbI, b2257''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 56: / Line 56: @@
-|-class='sortbottom'
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.P46aa9c3beb839-->
@@ Line 75: / Line 75: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46aa9c3d0d3dd"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
-|-
-|
-|
-GO:0016757
-|
-transferase activity, transferring glycosyl groups
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0328
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0016740
-|
-transferase activity
-|
-GO_REF:0000004<br />GO_REF:0000020
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0808<br />HAMAP:MF_01165
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0016021
-|
-integral to membrane
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0812
-|
-C
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0016020
-|
-membrane
-|
-GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR003342<br />SP_KW:KW-0397<br />SP_KW:KW-0472
-|
-C
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0009245
-|
-lipid A biosynthetic process
-|
-GO_REF:0000004<br />GO_REF:0000020
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0441<br />HAMAP:MF_01165
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0009103
-|
-lipopolysaccharide biosynthetic process
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0448
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0008610
-|
-lipid biosynthetic process
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0444
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0006493
-|
-protein amino acid O-linked glycosylation
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR003342
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
 |-
 |
@@ Line 238: / Line 86: @@
 mannosyltransferase activity
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 246: / Line 94: @@
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0009103
-|
-lipopolysaccharide biosynthetic process
-|
-PMID:11535605
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0010041
-|
-response to iron(III) ion
-|
-PMID:12139617
-|
-IGI: Inferred from Genetic Interaction
-|
-UniProtKB:P30843
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0010041
-|
-response to iron(III) ion
-|
-PMID:15322361
-|
-IEP: Inferred from Expression Pattern
-|
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0016763
-|
-transferase activity, transferring pentosyl groups
-|
-PMID:17928292
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
-|-
-|
-|
-GO:0006950
-|
-response to stress
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
 |-
 |
@@ Line 352: / Line 105: @@
 plasma membrane
 |
-GO_REF:0000020<br />GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_01165<br />SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+HAMAP:MF_01165
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 367: / Line 120: @@
 |
-GO:0000030
+GO:0005886
 |
-mannosyltransferase activity
+plasma membrane
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003342
+SP_KW:KW-0997
 |
-F
+C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 390: / Line 143: @@
 plasma membrane
 |
-GO_REF:0000020<br />GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_01165<br />SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+SP_KW:KW-1003
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 409: / Line 162: @@
 protein amino acid O-linked glycosylation
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 417: / Line 170: @@
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 424: / Line 177: @@
 |
-GO:0008610
+GO:0009103
 |
-lipid biosynthetic process
+lipopolysaccharide biosynthetic process
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0444
+SP_KW:KW-0448
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 443: / Line 196: @@
 |
-GO:0009103
+GO:0009245
 |
-lipopolysaccharide biosynthetic process
+lipid A biosynthetic process
 |
-GO_REF:0000004<br />PMID:11535605
+GOA:hamap<br />GO_REF:0000020
 |
-IMP: Inferred from Mutant Phenotype
+IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0448<br />
+HAMAP:MF_01165
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 466: / Line 219: @@
 lipid A biosynthetic process
 |
-GO_REF:0000020<br />GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_01165<br />SP_KW:KW-0441
+SP_KW:KW-0441
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 481: / Line 234: @@
 |
-GO:0010041
+GO:0016020
 |
-response to iron(III) ion
+membrane
 |
-PMID:12139617<br />PMID:15322361
+GOA:interpro<br />GO_REF:0000002
 |
-IEP: Inferred from Expression Pattern
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P30843<br />
+InterPro:IPR003342
 |
-P
+C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 504: / Line 257: @@
 membrane
 |
-GO_REF:0000002<br />GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003342<br />SP_KW:KW-0472
+SP_KW:KW-0472
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 523: / Line 276: @@
 integral to membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 531: / Line 284: @@
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 538: / Line 291: @@
 |
-GO:0016740
+GO:0016021
 |
-transferase activity
+integral to membrane
 |
-GO_REF:0000020<br />GO_REF:0000004
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_01165<br />SP_KW:KW-0808
+SP_SL:SL-9909
 |
-F
+C
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0016757
-|
-transferase activity, transferring glycosyl groups
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0328
-|
-F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 580: / Line 314: @@
 transferase activity, transferring pentosyl groups
 |
-PMID:17928292
+GOA:spec<br />GO_REF:0000003
 |
-IMP: Inferred from Mutant Phenotype
+IEA: Inferred from Electronic Annotation
 |
+EC:2.4.2
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.X46aa9c44c1efd&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.X46aa9c44c1efd-->
@@ Line 626: / Line 360: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aa9c4586e8d"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
@@ Line 637: / Line 371: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c4586e8d&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c4586e8d&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c4586e8d-->
@@ Line 660: / Line 396: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="O46aa9c472267d"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 693: / Line 433: @@
 ,760 - 190,635 (calc based on 24 Y, 28 W, and 7 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.O46aa9c472267d&page=24703&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.O46aa9c472267d&page=24703&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.O46aa9c472267d-->
@@ Line 711: / Line 451: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aa9c47900cc"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
 |-
 |
 Domain
 |
-- 29
+..237
 |
-Predicted membrane-spanning helix.
+[http://pfam.janelia.org/family/PF02366 PF02366  Dolichyl-phosphate-mannose-protein mannosyltransferase  ]
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 104
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 133
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
 |
-- 154
+PMID:19920124
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 189
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 226
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 279
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 308
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 334
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 366
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 401
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
-|
-Domain
-|
-- 425
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c47900cc&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c47900cc&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.M46aa9c47900cc-->
@@ Line 838: / Line 481: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.K46a831e12086f-->
 <!--
@@ Line 846: / Line 490: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="K46a831e12086f"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>arnT
+<beststructure>
-</beststructure>
+gene=arnT
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=arnT&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P76473 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=arnT&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P76473 PSI-PRED (P76473)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P76473 Genomes TO Protein (P76473)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.K46a831e12086f&page=24703&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.K46a831e12086f&page=24703&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.K46a831e12086f-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 883: / Line 546: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aa9c4856428"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.V46aa9c4856428&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.V46aa9c4856428&page=24703&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.V46aa9c4856428-->
@@ Line 905: / Line 568: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46aa9c48b31e5"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16130192 GI:16130192]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_416760.1 GeneID:947297]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0007464
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P76473 UniProtKB/Swiss-Prot:P76473]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:G7170
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7170-MONOMER EcoCyc:G7170-MONOMER]
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
+[[EcoGene]]
+|
+EcoGene:EG14093
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P76473|UniProt:P76473]]
+[http://www.ncbi.nlm.nih.gov/gene?term=947297 GeneID:947297]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF02366 PFAM:PF02366]
+RegulonDB:ECK120003746
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416760 RefSeq:NP_416760]
+EchoBASE:EB3846
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.Z46aa9c48b31e5&page=24703&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.Z46aa9c48b31e5&page=24703&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.Z46aa9c48b31e5-->
@@ Line 955: / Line 653: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a831e43a89f"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.V46a831e43a89f&page=24703&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24703.V46a831e43a89f&page=24703&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24703.V46a831e43a89f-->
@@ Line 976: / Line 674: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006950_!_response to stress]][[Category:GO:0009245_!_lipid A biosynthetic process]][[Category:Location:plasma membrane]]

arnT:Gene Product(s): Difference between revisions

Latest revision as of 20:49, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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