dppD:Gene Product(s): Difference between revisions

Standard name	DppD
Synonyms	dipeptide transporter^[1], ATP-binding component of ABC superfamily^[1], B3541^[2]^[1], DppD^[2]^[1] , ECK3528, JW3510, b3541
Product description	DppD^[2]^[3]; Component of dipeptide ABC transporter^[2]^[3] Dipeptide/heme transport, ATP-binding protein; also transports 5-aminolevulinic acid^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000166	nucleotide binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013563	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003439	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010066	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013563	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017871	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0015031	protein transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0653	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016887	ATPase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003439	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016887	ATPase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017871	F	Seeded from EcoCyc (v14.0)	complete
	GO:0017111	nucleoside-triphosphatase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0015232	heme transporter activity	PMID:16905647^[5]	IMP: Inferred from Mutant Phenotype		F		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of dipeptide ABC transporter	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MALLNVDKLS VHFGDESAPF RAVDRISYSV KQGEVVGIVG ESGSGKSVSS LAIMGLIDYP GRVMAEKLEF NGQDLQRISE KERRNLVGAE VAMIFQDPMT SLNPCYTVGF QIMEAIKVHQ GGNKSTRRQR AIDLLNQVGI PDPASRLDVY PHQLSGGMSQ RVMIAMAIAC RPKLLIADEP TTALDVTIQA QIIELLLELQ QKENMALVLI THDLALVAEA AHKIIVMYAG QVVETGDAHA IFHAPRHPYT QALLRALPEF AQDKERLASL PGVVPGKYDR PNGCLLNPRC PYATDRCRAE EPALNMLADG RQSKCHYPLD DAGRPTL
Length	327
Mol. Wt	35.844 kDa
pI	6.6 (calculated)
Extinction coefficient	13,410 - 14,160 (calc based on 9 Y, 0 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	52..182	PF00005 ABC transporter	PMID:19920124^[6]
Domain	233..297	PF08352 Oligopeptide/dipeptide transporter, C-terminal region	PMID:19920124^[6]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dppD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131413	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948065	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011566	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0AAG0	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG12627	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG12627	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948065	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002339	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2511	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Létoffé, S et al. (2006) The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins. Proc. Natl. Acad. Sci. U.S.A. 103 12891-6 PubMed
↑ ^6.0 ^6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

dppD:Gene Product(s): Difference between revisions

Latest revision as of 21:05, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="A46aaf10c0e5ae"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-dipeptide transporter<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3541<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''dipeptide transporter<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3541<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3528, JW3510, b3541''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 58: / Line 58: @@
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.A46aaf10c0e5ae&page=27611&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.A46aaf10c0e5ae-->
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46aaf10d90090"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0005524
+GO:0000166
 |
-ATP binding
+nucleotide binding
 |
-PMID:7536291
+GOA:interpro<br />GO_REF:0000002
 |
-ISS: Inferred from Sequence or Structural Similarity
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR003593
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 103: / Line 103: @@
 |
-GO:0005737
+GO:0000166
 |
-cytoplasm
+nucleotide binding
 |
-PMID:7536291
+GOA:interpro<br />GO_REF:0000002
 |
-ISS: Inferred from Sequence or Structural Similarity
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR013563
 |
-C
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 122: / Line 122: @@
 |
-GO:0006857
+GO:0000166
 |
-oligopeptide transport
+nucleotide binding
 |
-PMID:1702779
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IGI: Inferred from Genetic Interaction
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0547
 |
-P
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 141: / Line 141: @@
 |
-GO:0015198
+GO:0005524
 |
-oligopeptide transporter activity
+ATP binding
 |
-PMID:1702779
+GOA:interpro<br />GO_REF:0000002
 |
-IGI: Inferred from Genetic Interaction
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR003439
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 160: / Line 160: @@
 |
-GO:0015421
+GO:0005524
 |
-oligopeptide-transporting ATPase activity
+ATP binding
 |
-PMID:7536291
+GOA:interpro<br />GO_REF:0000002
 |
-ISS: Inferred from Sequence or Structural Similarity
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR010066
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 179: / Line 179: @@
 |
-GO:0042936
+GO:0005524
 |
-dipeptide transporter activity
+ATP binding
 |
-PMID:1702779
+GOA:interpro<br />GO_REF:0000002
 |
-IGI: Inferred from Genetic Interaction
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR013563
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 198: / Line 198: @@
 |
-GO:0042938
+GO:0005524
 |
-dipeptide transport
+ATP binding
 |
-PMID:1702779
+GOA:interpro<br />GO_REF:0000002
 |
-IGI: Inferred from Genetic Interaction
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR017871
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 217: / Line 217: @@
 |
-GO:0043190
+GO:0005524
 |
-ATP-binding cassette (ABC) transporter complex
+ATP binding
 |
-PMID:7536291
+GOA:spkw<br />SP_KW:GO_REF:0000004
-|
-ISS: Inferred from Sequence or Structural Similarity
-|
-|
-C
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0009063
-|
-amino acid catabolic process
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-|
-GO:0000166
-|
-nucleotide binding
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003593<br />InterPro:IPR013563<br />SP_KW:KW-0547
+SP_KW:KW-0067
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 278: / Line 240: @@
 plasma membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+SP_KW:KW-0997
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 293: / Line 255: @@
 |
-GO:0006810
+GO:0005886
 |
-transport
+plasma membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0813
+SP_KW:KW-1003
 |
-P
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 316: / Line 278: @@
 protein transport
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 324: / Line 286: @@
 P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0015197
-|
-peptide transporter activity
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR010066
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0015833
-|
-peptide transport
-|
-GO_REF:0000002<br />GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR010066<br />InterPro:IPR013563
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 373: / Line 297: @@
 membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 381: / Line 305: @@
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 392: / Line 316: @@
 ATPase activity
 |
-GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003439<br />InterPro:IPR017871
+InterPro:IPR003439
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 407: / Line 331: @@
 |
-GO:0017111
+GO:0016887
 |
-nucleoside-triphosphatase activity
+ATPase activity
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003593
+InterPro:IPR017871
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 426: / Line 350: @@
 |
-GO:0000166
+GO:0017111
 |
-nucleotide binding
+nucleoside-triphosphatase activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003593<br />InterPro:IPR013563<br />SP_KW:KW-0547
+InterPro:IPR003593
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0005524
-|
-ATP binding
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004<br />PMID:7536291
-|
-ISS: Inferred from Sequence or Structural Similarity
-|
-InterPro:IPR003439<br />InterPro:IPR010066<br />InterPro:IPR013563<br />InterPro:IPR017871<br />SP_KW:KW-0067<br />
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-PMID:7536291
-|
-ISS: Inferred from Sequence or Structural Similarity
-|
-|
-C
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 483: / Line 369: @@
 |
-GO:0005886
+GO:0019898
 |
-plasma membrane
+extrinsic to membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+SP_SL:SL-9903
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0006810
-|
-transport
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0813
-|
-P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006857
-|
-oligopeptide transport
-|
-GO_REF:0000004<br />PMID:1702779
-|
-IGI: Inferred from Genetic Interaction
-|
-SP_KW:KW-0571<br />
-|
-P
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 540: / Line 388: @@
 |
-GO:0015031
+GO:0015232
-|
-protein transport
-|
-GO_REF:0000004
 |
-IEA: Inferred from Electronic Annotation
+heme transporter activity
 |
-SP_KW:KW-0653
+PMID:16905647
 |
-P
+IMP: Inferred from Mutant Phenotype
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0015197
-|
-peptide transporter activity
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR010066
 |
 F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0015198
-|
-oligopeptide transporter activity
-|
-GO_REF:0000004<br />PMID:1702779
-|
-IGI: Inferred from Genetic Interaction
-|
-SP_KW:KW-0571<br />
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0015421
-|
-oligopeptide-transporting ATPase activity
-|
-PMID:7536291
-|
-ISS: Inferred from Sequence or Structural Similarity
-|
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0015833
-|
-peptide transport
-|
-GO_REF:0000002<br />GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR010066<br />InterPro:IPR013563
-|
-P
-|
-Seeded from EcoCyc
 |
 complete
-|-
-|
-|
+|- class="tableEdit_footer"
-GO:0016020
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.T46aaf10d90090&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-|
-membrane
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0472
-|
-C
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0016887
-|
-ATPase activity
-|
-GO_REF:0000002<br />GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR003439<br />InterPro:IPR017871
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.T46aaf10d90090&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.T46aaf10d90090-->
@@ Line 683: / Line 417: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46aaf115db750"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 698: / Line 432: @@
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.H46aaf115db750&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.H46aaf115db750&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.H46aaf115db750-->
@@ Line 715: / Line 449: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aaf1173cc0a"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
@@ Line 726: / Line 460: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.J46aaf1173cc0a&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.J46aaf1173cc0a&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.J46aaf1173cc0a-->
@@ Line 749: / Line 485: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="H46aaf118e32be"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 768: / Line 508: @@
 !align=left {{table heading style}} |Mol. Wt
 ||
-.84 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.844 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
+.6 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 14160 (calc based on 9 Y, 0 W, and 6 C residues)
+,410 - 14,160 (calc based on 9 Y, 0 W, and 6 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.H46aaf118e32be&page=27611&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.H46aaf118e32be&page=27611&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.H46aaf118e32be-->
@@ Line 793: / Line 533: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46aaf119692e0"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Domain
+|
+..182
+|
+[http://pfam.janelia.org/family/PF00005 PF00005  ABC transporter]
+|
+|
+PMID:19920124
 |-
 |
 Domain
 |
-- 254
+..297
 |
-[[interpro:IPR003439|ABC transporter]]
+[http://pfam.janelia.org/family/PF08352 PF08352  Oligopeptide/dipeptide transporter, C-terminal region]
 |
-[http://www.uniprot.org/uniprot/P0AAG0#section_features UniProt:P0AAG0]
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.W46aaf119692e0&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.W46aaf119692e0&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.W46aaf119692e0--></td>
@@ Line 818: / Line 571: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.D46a87f5644038-->
 <!--
@@ Line 826: / Line 580: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="D46a87f5644038"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>dppD
+<beststructure>
-</beststructure>
+gene=dppD
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=dppD&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0AAG0 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=dppD&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AAG0 PSI-PRED (P0AAG0)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AAG0 Genomes TO Protein (P0AAG0)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.D46a87f5644038&page=27611&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.D46a87f5644038&page=27611&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.D46a87f5644038-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 863: / Line 636: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aaf11a4050a"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.A46aaf11a4050a&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.A46aaf11a4050a&page=27611&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.A46aaf11a4050a-->
@@ Line 885: / Line 658: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aaf11aa39c0"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131413 GI:16131413]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_417998.1 GeneID:948065]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0011566
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0AAG0 UniProtKB/Swiss-Prot:P0AAG0]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=DPPD-MONOMER EcoCyc:DPPD-MONOMER]
+Escherichia coli str. K-12 substr. MG1655
+|-
 |
+[[EcoCyc]]
+|
+EcoCyc:EG12627
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P0AAG0|UniProt:P0AAG0]]
+EcoGene:EG12627
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00005 PFAM:PF00005]
+[http://www.ncbi.nlm.nih.gov/gene?term=948065 GeneID:948065]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417998 RefSeq:NP_417998]
+RegulonDB:ECK120002339
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P0AAG0 ModBase:P0AAG0]
+EchoBASE:EB2511
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.V46aaf11aa39c0&page=27611&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.V46aaf11aa39c0&page=27611&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.V46aaf11aa39c0-->
@@ Line 942: / Line 743: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46a87f59b5fa6"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.S46a87f59b5fa6&page=27611&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27611.S46a87f59b5fa6&page=27611&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27611.S46a87f59b5fa6-->
@@ Line 957: / Line 758: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0009063_!_amino acid catabolic process]][[Category:GO:0005737_!_cytoplasm]][[Category:Complex:dipeptide ABC transporter]][[Category:Location:cytoplasm]]

dppD:Gene Product(s): Difference between revisions

Latest revision as of 21:05, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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