User:DanielRenfro: Difference between revisions

Latest revision as of 14:21, 1 July 2016

I am an experienced (15+ years) web developer making a living working an instance of the Mediawiki software for Vistaprint Inc. in Lexington. I'm relatively knowledgable about the software and am glad to answer any questions you have — you can email me or leave a message on my talk page.

Contact Info

Email: bluecurio@gmail.com

IRC: daniel_renfro

About

Vistaprint

I am currently employed by Vistaprint as a senior software engineer. I am working on VistaWiki: the internal-documentation system. You can read more about it here:

EcoliWiki

Formerly (12/1006 - 12/2011) the premier developer for EcoliWiki at Texas A&M University, I was actively involved in the following research/projects: I was actively involoved in the following research/projects:

EcoliWiki - the go-to source for all things Escherichia coli
SubtilisWiki - the wiki for Bacillus subtilis
GONUTS - a wiki for the Gene Ontology, including user-contributed documentation and annotations
PortEco - a next-generation resource for knowledge and data about the biology of Escherichia coli K-12 group strains
the Gene Ontology
GMOD
Inernational Society of Biocuration

Publications

I had the great oppurtunity to work on projects that both expanded my biological knowledge and challenged my technical thinking. Out of this came a number of publications:

EcoliWiki: a wiki-based community resource for Escherichia coli - Nucl. Acids Res. (2012) 40 (D1): D1270-D1277.
GONUTS: the Gene Ontology Normal Usage Tracking System - Nucl. Acids Res. (2012) 40 (D1): D1262-D1269.
The Gene Ontology in 2010: extensions and refinements. - Nucl. Acids Res. (2010) 38 (suppl 1): D331-D335.
The Gene Ontology: enhancements for 2011 - Nucl. Acids Res. (2012) 40 (D1): D559-D564.
MetaBase—the wiki-database of biological databases - Nucl. Acids Res. (2012) 40 (D1): D1250-D1254.

Other stuff

links that I can never remember!

just for fun...

Looking out from the 4^th floor.
The Ecoliwiki snowman!
The snowman with Brenley & Nathan for scale.
My desk in the Hu Lab

- Daniel Renfro

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 __NOTOC__
-<!--        BANNER ACROSS TOP OF PAGE        -->
+<div style="float:right;background:white; ">
-{| id="mp-topbanner" style="width:100%; background:#fcfcfc; margin-top:1.2em; border:1px solid #ccc;"
+[[Image:DanielRenfro.jpg|thumb|250px|Daniel in San Diego, circa 01/2009.]]
-| style="width:55%; color:#000;" |
+</div>
-<!--        "WELCOME TO ECOLIWIKI" AND ARTICLE COUNT        -->
-{| style="width:280px; border:none; background:none;"
-| style="width:280px; text-align:center; white-space:nowrap; color:#000;" |
-<div style="font-size:162%; border:none; margin:0; padding:.1em; color:#000;">Welcome to [[EcoliWiki]],</div>
-<div style="top:+0.2em; font-size:95%;"> <span class=plainlinks>[http://www.ecolicommunity.org/ EcoliHub's] subsystem for community annotation.</span></div>
-<div id="articlecount" style="width:100%; text-align:center; font-size:85%;">[[Special:Statistics|{{NUMBEROFARTICLES}}]] articles.</div>
-|}
-<!--        PORTAL LIST ON RIGHT-HAND SIDE        -->
-| style="width:13%; font-size:95%;" |
-* [[:Category:Strains|Strains]]
-* [[:Category:Plasmids|Plasmids]]
-* [[:Category:Databases|Databases]]
-| style="width:16%; font-size:95%;" |
-* [[:Category:Gene_Lists|Gene Lists]]
-* [[:Category:Bioinformatics Tools|Bioinformatics Tools]]
-* [[:Category:Methods|Methods]]
-| style="width:16%; font-size:95%;" |
-* [[EcoliWiki:Wishlist|Wishlist]]
-* [[EcoliWiki:Membership|Membership]]
-* [[:Category:Help|Help]]
-|}
-{| style="width:100%; background:#fcfcfc; margin-top:1.2em; border:1px solid #ccc; padding:15px;"
-|
-[[Image:DanielRenfro.jpg|thumb|200px|Daniel circa 2008]]
-====email====
+I am an experienced (15+ years) web developer making a living working an instance of the [[wikipedia:Mediawiki|Mediawiki]] software for [[wikipedia:Vistaprint|Vistaprint Inc.]] in [[wikipedia:Lexington, Massachusetts|Lexington]]. I'm relatively knowledgable about the software and am glad to answer any questions you have &mdash; you can email me or leave a message on my [[User talk:DanielRenfro|talk]] page.
-[mailto:bluecurio@gmail.com bluecurio@gmail.com]
-====physical location====
+== Contact Info ==
-Dept. of Biochemistry and Biophysics<br />
+: '''Email''': [mailto:bluecurio@gmail.com bluecurio@gmail.com]
-TAMU<br />
+: '''IRC''': <tt>daniel_renfro</tt>
-Texas A&M Univ.<br />
-College Station, TX 77843-2128<br />
--862-4054<br />
-====About====
+== About ==
-I am the premier developer for the EcoliWiki here at Texas A&M University.
+=== Vistaprint ===
-I work closely with the users to make the wiki as usable and informative as possible.
+I am currently employed by [http://vistaprint.com Vistaprint] as a senior software engineer. I am working on VistaWiki: the internal-documentation system. You can read more about it here:
-If you have any questions or would like to provide any feedback, I would love to hear from you. My contact information is above, feel free to shoot me an email.
+* [http://www.theappgap.com/vistawiki-%E2%80%93-example-of-enterprise-20-knowledge-sharing.html VistaWiki – Example of Enterprise 2.0 Knowledge Sharing]
-My favorite protein is [http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb33_1.html reverse transcriptase].
+* [http://billives.typepad.com/portals_and_km/2009/04/another-enterprise-20-knowledge-sharing-success-story-vistawiki.html Another Enterprise 2.0 Knowledge Sharing Success Story - VistaWiki]
+* [http://kang74.wordpress.com/2010/08/12/case-study-on-enterprise-2-0/ Case Study on Enterprise 2.0]
-|}
+=== EcoliWiki ===
+Formerly (12/1006 - 12/2011) the premier developer for [http://ecoliwiki.net EcoliWiki] at [[wikipedia:Texas A&M University|Texas A&M University]], I was actively involved in the following research/projects:
+I was actively involoved in the following research/projects:
+* [http://ecoliwiki.net EcoliWiki] - the go-to source for all things ''Escherichia coli''
+* [http://subtiliswiki.net SubtilisWiki] - the wiki for ''Bacillus subtilis''
+* [http://gowiki.tamu.edu GONUTS] - a wiki for the Gene Ontology, including user-contributed documentation and annotations
+* [http://porteco.net PortEco] - a next-generation resource for knowledge and data about the biology of ''Escherichia coli'' K-12 group strains
+* [http://geneontology.org the Gene Ontology]
+* [http://gmod.org GMOD]
+* [http://www.biocurator.org/ Inernational Society of Biocuration]
-<br /><br /><br />
+====Publications====
-====Gallery of Images====
+I had the great oppurtunity to work on projects that both expanded my biological knowledge and challenged my technical thinking. Out of this came a number of publications:
+* [[doi: 10.1093/nar/gkr880|EcoliWiki: a wiki-based community resource for Escherichia coli]] - Nucl. Acids Res. (2012) 40 (D1): D1270-D1277.
+* [[doi: 10.1093/nar/gkr907|GONUTS: the Gene Ontology Normal Usage Tracking System]] - Nucl. Acids Res. (2012) 40 (D1): D1262-D1269.
+* [[doi: 10.1093/nar/gkp1018|The Gene Ontology in 2010: extensions and refinements.]] - Nucl. Acids Res. (2010) 38 (suppl 1): D331-D335.
+* [[doi: 10.1093/nar/gkr1028|The Gene Ontology: enhancements for 2011]] - Nucl. Acids Res. (2012) 40 (D1): D559-D564.
+* [[doi: 10.1093/nar/gkr1099|MetaBase—the wiki-database of biological databases]] - Nucl. Acids Res. (2012) 40 (D1): D1250-D1254.
+== Other stuff ==
+===links that I can never remember!===
+* [[:Category:InMajorRevision]]
+* [[:Category:NeedsEditing]]
+===just for fun...===
 <gallery>
+File:Biobio.jpg|Looking out from the 4<sup>th</sup> floor.
 Image:12-10-08 1731.jpg|The Ecoliwiki snowman!
 Image:12-10-08 1734.jpg|The snowman with [[User:Bmcintosh|Brenley]] & Nathan for scale.
+File:daniels_desk.JPG|My desk in the Hu Lab
 </gallery>
+[[File:Madeonamac20050720.gif]]
+http://www.venganza.org/images/fsmbanner1.jpg
+- Daniel Renfro
 [[Category:Users who can help you get an account]]
-[[Category:EcoliWiki staff]]
 [[Category:Texas A&M University]]
-__NOTOC__
-__NOEDITSECTION__