Phage Mu orf4:Gene Product(s): Difference between revisions

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{{Tab|Quickview|Phage_Mu_25}}{{Tab|Gene|Phage_Mu_25}}{{Tab On|Gene Product(s)|Phage_Mu_25}}{{Tab|Expression|Phage_Mu_25}}{{Tab|Evolution|Phage_Mu_25}}{{Tab|On One Page|Phage_Mu_25}}{{TabsBottom}}
{{Tab|Quickview|Phage_Mu_orf4}}{{Tab|Gene|Phage_Mu_orf4}}{{Tab On|Gene Product(s)|Phage_Mu_orf4}}{{Tab|Expression|Phage_Mu_orf4}}{{Tab|Evolution|Phage_Mu_orf4}}{{Tab|On One Page|Phage_Mu_orf4}}{{TabsBottom}}
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==Nomenclature==
==Nomenclature==
{{{NOMENCLATURE_TABLE}}}
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|-
!align=left {{table heading style}} |Standard name
||
hypotheical protein
|-
!align=left {{table heading style}} |Synonyms
||
 
|-
!align=left {{table heading style}} |Product description
||
gp25;
|-
!align=left {{table heading style}} |EC number (for enzymes)
||
 
 
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<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
{{{NOMENCLATURE_NOTES}}}
 


==Function==
==Function==
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<protect>
<protect>
<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
{{{GO_TABLE}}}
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!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
{{{INTERACTIONS_TABLE}}}
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!|Partner Type!!Partner!!Notes!!References!!Evidence
 
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<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
{{{FUNCTION_NOTES}}}
 


==Localization==
==Localization==
{{{LOCALIZATION_TABLE}}}
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!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 
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===Notes===
===Notes===
{{{LOCALIZATION_NOTES}}}
 


==Structure and Physical Properties==
==Structure and Physical Properties==
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<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
{{{PHYSICAL_PROPERTIES_TABLE}}}
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{|  id="Y49edfcb873533"  class=" tableEdit Product_phys_prop_table" 
 
|-
!align=left {{table heading style}} |Name
||
 
|-
!align=left {{table heading style}} |Sequence
||
<pre>MDLISVLALW PYLLPVVAGG AVWAMRRSFA STERVERLEN RMTEMETRYA SIPGTEDVHE
MRLRIAELSG DIRVLSQRVQ SFSHQLELLL ENAVNRSNS</pre>
|-
!align=left {{table heading style}} |Length
||
99
|-
!align=left {{table heading style}} |Mol. Wt
||
11.315 kDa
|-
!align=left {{table heading style}} |pI
||
5.9 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
13,980 (calc based on 2 Y, 2 W, and  C residues)
 
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<span id="Domains"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains"><big>'''Domains/Motifs/Modification Sites'''</big></span>
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<td>
<td>
{{{DOMAINS_TABLE}}}
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{|  id="T49edfcb87ce73"  class=" tableEdit Product_motif_table dataTable" 
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!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
4 - 24
|
Predicted membrane-spanning helix.
|
TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
|
 
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</td>
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<td>
<td>
<!-- motifs column 2-->
<!-- motifs column 2-->
<motif_map/>
<motif_map/>
{{TMHMM Picture|Phage_Mu_25}}
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<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
{{{STRUCTURE_TABLE}}}
<span id='Structure'></span><big>'''Structure'''</big><br />
<!--Structure_notes--></protect>
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!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_Mu_25
taxon=10677
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===
{{{STRUCTURE_NOTES}}}
 


==Gene Product Resources==
==Gene Product Resources==
{{BacktoTop}}
{{BacktoTop}}
{{{PRODUCT_RESOURCES_TABLE}}}
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<protect><!--Resources_notes--></protect>
===Notes===
===Notes===
{{{PRODUCT_RESOURCES_NOTES}}}
 


==Accessions in Other Databases==
==Accessions in Other Databases==
{{BacktoTop}}
{{BacktoTop}}
{{{ACCESSIONS_TABLE}}}
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===Notes===
===Notes===
{{{ACCESSIONS_NOTES}}}
 


==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
{{{LINKS}}}
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{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
 
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
{{{CATEGORIES}}}
 


[[Category:Proteins]]
[[Category:Proteins]]

Latest revision as of 18:52, 21 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

hypotheical protein

Synonyms
Product description

gp25;

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table


Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MDLISVLALW PYLLPVVAGG AVWAMRRSFA STERVERLEN RMTEMETRYA SIPGTEDVHE
MRLRIAELSG DIRVLSQRVQ SFSHQLELLL ENAVNRSNS
Length

99

Mol. Wt

11.315 kDa

pI

5.9 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4 - 24

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]


edit table

<motif_map/>

tmhmm.php?gene=Phage_Mu_25&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_Mu_25 taxon=10677 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories


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